RNA id: TU189143


Basic Information

Item Value
RNA id TU189143
length 1265
lncRNA type read_through
GC content 0.39
exon number 2
gene id G139720
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7628240 ~ 7982297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaccagcagatgacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcaagcagtttggactgtgtgtctctccactcttcctccagactctgctcccttgatttacaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtcatctgctgatgttggtccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatgcttccctctgctactgacaacttttatggagatgcagatttcattttctagcaggacttggcgcactgccaaaagtactaattggttttatataatattatatttttctgagacactaagGCTTTAATAACGGCGATATATAGAGCAAGTAGCAATAGTGCCAGATTTTAACCAGGTCACCAACATAATAGTGATTAAATTATAGATAGACAAAACTTGTTTAGAACTAAAATAAGccaaatccaaaaaaaacaaccaaaagaTGAAACAAAAAGACAATCAGTGATCCAACACAGATACAATCAAACAGGAGAACTTCTCAGCATGCAGTGTACAAGATTGGTAATACTTTGCCAACTGGTAGTTCCAACAGGACAagacaggacaagacaagacatgtaGATGACAGTTATTGGTTATCAATTAAATGGTGCGTTTCCACTGCATTCTCTCTACTAATACTGTTagactgtttctttttttggttttctattagtgaaaaaaaaaatggtatctgaaatatttttttaaatagctgcTTAATGGTGGTTCCAAGTGTGCTGAGGGTGGACTAAAATCTAATGTGTAAACCTTGCGTAGAGTTGATTGGCCAGAGAAAAGTGTACAAAGGtagatcagagactgtaaaaaaagatggacgctgtgtcgcagttcccattcattcaatgaaaatgaagctaaaatcttccaccatgttggcgatcctgaaacccgagtcagtagagcgcagtagagaccagaggagagagaaagactgtggagagacagcctactcatttaaataaccccgcccctgagggctgcctcgaggtcacaggctgcggagcggagctgacggtctgttattggtcccgcccataatcAGCCCTTTTACAACAACCACACCTGTTTTGAATAGaactgaataacgttttaaaaaatgaattctctggggatataaaaatttgacaatataagcagaggttacactagctgctgcat

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189178 lncRNA upstream 86267 7568367 ~ 7568570 (+) True G139750
TU189175 lncRNA upstream 114894 7539659 ~ 7539943 (+) True G139747
TU189166 lncRNA upstream 147480 7507052 ~ 7507357 (+) True G139738
TU189165 lncRNA upstream 178491 7475970 ~ 7476346 (+) True G139737
TU189132 lncRNA upstream 451581 7202932 ~ 7203256 (+) True G139712
TU189221 lncRNA downstream 38149 8020446 ~ 8020933 (+) True G139781
TU189223 lncRNA downstream 40086 8022383 ~ 8035973 (+) True G139782
TU189214 lncRNA downstream 56598 8038895 ~ 8042442 (+) True G139778
TU189228 lncRNA downstream 79433 8061730 ~ 8065226 (+) True G139787
TU189234 lncRNA downstream 115001 8097298 ~ 8097743 (+) True G139792
XM_022677942.1 mRNA upstream 304 7335004 ~ 7654533 (+) True LOC103025951
XM_022677943.1 mRNA upstream 304 7335004 ~ 7654533 (+) False LOC103025951
XM_022677944.1 mRNA upstream 2870 7335004 ~ 7651967 (+) False LOC103025951
XM_022677941.1 mRNA upstream 404704 7230536 ~ 7250133 (+) True LOC103025648
XM_007258057.2 mRNA upstream 470434 7164784 ~ 7184403 (+) True psmb5
XM_022677952.1 mRNA downstream 149989 8132286 ~ 8509323 (+) True clstn2
XM_022677953.1 mRNA downstream 589536 8571833 ~ 8573911 (+) True LOC111194298
XM_022677956.1 mRNA downstream 1040800 9023097 ~ 9025014 (+) True LOC103021839
XM_022677955.1 mRNA downstream 1040800 9023097 ~ 9024279 (+) False LOC103021839
XM_022677669.1 mRNA downstream 1136871 9119168 ~ 9125820 (+) True LOC111194194
TU188724 other upstream 608549 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 1387450 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 1412266 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 1494671 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1510936 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1179036 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 1240312 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 1557478 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 1761401 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2007621 9989918 ~ 9990296 (+) True G140258

Expression Profile