RNA id: TU189147


Basic Information

Item Value
RNA id TU189147
length 1171
lncRNA type sense_over
GC content 0.34
exon number 3
gene id G139720
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7628240 ~ 7982297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTAAATCAAAAAAATTGAAAGGACTTTGAAAGTatgctcaagtgcagtcgcaaagaccatcgcACAacacgttatgatgaaactggctctcatcaggacagctgcaagaaaaggaagagcaagagttaccagctttagaaaccgcaagttaccagcaccccagataagagcatctaaatgcttcagtattttggtttatttagcacttttaagttgctacatgattccttatgtgttccttcataatctggatgacttcattattgtaatttacagtgtagaaacatgtagaataaatgaaaacattgaatgagaagatgaaGGTGAaaatactactactactactactactactactctatctactgtaactgtagattgtCCCATTTGTTAACAGAAATAATGGGAGGAGGCATCATGTAGACCAGCAGAcagggtgggacaattggcctagctaaattggggagaaaaaaaatgaaaaaaaaaaatagaaataaaggtaaataaagAGAATCTGAGGGAAATCTTATTCTGCTGTGTTAACTTTGATCCTGAATTTCccatgaaattatttttttagactaTATTTGAGATGATTTAACTCACcaaaatatattgtatgatttttttttttttttgcagtatgtGGGATGCTGAGAGTTGGGAAATTATGTGTATTAATTGTGGAATATTGTGAAATCAAGTATTTTTGTTTGAATTGCAGAACACAGAATTGGATATTATTGctacagtatattattattagtatcagtaAGTTATTGATACAGAGATGGACCTTTATTAatacatatgaaaaaaaaaaatgatataaatgctatatacagtaaattaatacattccgatccatttttttctacattagcAATACATTTTCATCACAGTGATGgtattatttttgtcattttcactATAGGGATGAGGGTGAAAATAGGGTATTTGgggtatttgtatttgtatacacacacacctccatttCTACATTTCTCCAGCTGCCATTGGCTCCACCACCTTtcctgaccccgcccccaacTGGACTCTTGTAATATCGAATCTCACGATGGTGTACGACAAAAGTGTATTTATTCCATTGTATTTTTCCCCCTTTCTTTTTTGTAAATTGGAATAAAGACGCTATGTTTGGAGttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189178 lncRNA upstream 59670 7568367 ~ 7568570 (+) True G139750
TU189175 lncRNA upstream 88297 7539659 ~ 7539943 (+) True G139747
TU189166 lncRNA upstream 120883 7507052 ~ 7507357 (+) True G139738
TU189165 lncRNA upstream 151894 7475970 ~ 7476346 (+) True G139737
TU189132 lncRNA upstream 424984 7202932 ~ 7203256 (+) True G139712
TU189221 lncRNA downstream 360315 8020446 ~ 8020933 (+) True G139781
TU189223 lncRNA downstream 362252 8022383 ~ 8035973 (+) True G139782
TU189214 lncRNA downstream 378764 8038895 ~ 8042442 (+) True G139778
TU189228 lncRNA downstream 401599 8061730 ~ 8065226 (+) True G139787
TU189234 lncRNA downstream 437167 8097298 ~ 8097743 (+) True G139792
XM_022677941.1 mRNA upstream 378107 7230536 ~ 7250133 (+) True LOC103025648
XM_007258057.2 mRNA upstream 443837 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA upstream 443837 7164885 ~ 7184403 (+) False psmb5
XM_007258067.2 mRNA upstream 465978 7160020 ~ 7162262 (+) True LOC103025339
XM_007258052.2 mRNA upstream 581942 7041560 ~ 7046298 (+) True LOC103044361
XM_022677945.1 mRNA downstream 27976 7688107 ~ 7693776 (+) True LOC107197863
XM_022677702.1 mRNA downstream 38230 7698361 ~ 7706542 (+) True LOC111194231
XM_022677947.1 mRNA downstream 49185 7709316 ~ 7717249 (+) True LOC103026260
XM_022677668.1 mRNA downstream 61609 7721740 ~ 7729314 (+) True LOC103026570
XM_022677948.1 mRNA downstream 81592 7741723 ~ 7911771 (+) True carmil3
TU188724 other upstream 581952 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 1360853 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 1385669 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 1468074 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1484339 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1501202 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 1562478 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 1879644 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2083567 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2329787 9989918 ~ 9990296 (+) True G140258

Expression Profile