RNA id: TU189234


Basic Information

Item Value
RNA id TU189234
length 446
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G139792
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8097298 ~ 8097743 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttttattgtttgatgattattatggcttacaaccaatgaaaacccaaaaatcagtgtctcagaaaattaaaatctaatttaagaccaattggtacttttggcagtgtgctgccaagtcctgctggaaaatgaaatccgcagatgacatgtctctccaaaccatcactattTGTGGATTACtaacttcacactagactccagactctggtctcttgatttacaaatgaaatacaaaaatttactgatggtcagtgatggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccggaaaatcttacaacacttaatgcttctctctgcttttataaaggagatgcggatttcattttccagcaggatttgtcACACtccccacactgccaaaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189228 lncRNA upstream 32072 8061730 ~ 8065226 (+) True G139787
TU189214 lncRNA upstream 54856 8038895 ~ 8042442 (+) True G139778
TU189223 lncRNA upstream 61325 8022383 ~ 8035973 (+) True G139782
TU189221 lncRNA upstream 76365 8020446 ~ 8020933 (+) True G139781
TU189143 lncRNA upstream 115001 7654837 ~ 7982297 (+) True G139720
TU189242 lncRNA downstream 24296 8122039 ~ 8123343 (+) True G139798
TU189341 lncRNA downstream 415212 8512955 ~ 8514728 (+) True LOC111194297
TU189342 lncRNA downstream 415212 8512955 ~ 8514728 (+) False LOC111194297
XR_002651018.1 lncRNA downstream 415214 8512957 ~ 8514756 (+) False LOC111194297
TU189363 lncRNA downstream 446564 8544307 ~ 8544731 (+) True G139902
XM_022677950.1 mRNA upstream 82673 7948922 ~ 8014625 (+) True LOC103023286
XM_022677948.1 mRNA upstream 185527 7741723 ~ 7911771 (+) True carmil3
XM_022677949.1 mRNA upstream 185527 7741725 ~ 7911771 (+) False carmil3
XM_022677668.1 mRNA upstream 367984 7721740 ~ 7729314 (+) True LOC103026570
XM_022677947.1 mRNA upstream 380049 7709316 ~ 7717249 (+) True LOC103026260
XM_022677952.1 mRNA downstream 34543 8132286 ~ 8509323 (+) True clstn2
XM_022677953.1 mRNA downstream 474090 8571833 ~ 8573911 (+) True LOC111194298
XM_022677956.1 mRNA downstream 925354 9023097 ~ 9025014 (+) True LOC103021839
XM_022677955.1 mRNA downstream 925354 9023097 ~ 9024279 (+) False LOC103021839
XM_022677669.1 mRNA downstream 1021425 9119168 ~ 9125820 (+) True LOC111194194
TU188724 other upstream 1051010 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 1829911 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 1854727 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 1937132 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 1953397 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 1063590 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 1124866 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 1442032 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 1645955 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 1892175 9989918 ~ 9990296 (+) True G140258

Expression Profile