RNA id: TU189365


Basic Information

Item Value
RNA id TU189365
length 259
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G139903
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 8544771 ~ 8545029 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAAGTGACGCAAATTTTGAGgagaaataatgataataaaaaaattttaCAAATTCCTAAAATTTAATTGAGTCTTTAggtagggatgcactgaatattcatTGTCATAATATTATTCTTCTGAAacaagccaaaaaaataaaaaaataagcctaGTCTTGGGAGTACACAGCATTTTGGAGGAAGTTTTTCCAAATTTATTAATGGAAAATTTAGTCGTGAATTAGgcgtaattatttaaaataagtaaaaagaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189363 lncRNA upstream 40 8544307 ~ 8544731 (+) True G139902
XR_002651018.1 lncRNA upstream 30015 8512957 ~ 8514756 (+) False LOC111194297
TU189341 lncRNA upstream 30043 8512955 ~ 8514728 (+) True LOC111194297
TU189342 lncRNA upstream 30043 8512955 ~ 8514728 (+) False LOC111194297
TU189242 lncRNA upstream 421428 8122039 ~ 8123343 (+) True G139798
TU189420 lncRNA downstream 248832 8793861 ~ 8794207 (+) True G139952
TU189422 lncRNA downstream 271333 8816362 ~ 8816858 (+) True G139954
TU189444 lncRNA downstream 415501 8960530 ~ 8983718 (+) True G139958
TU189508 lncRNA downstream 680944 9225973 ~ 9226183 (+) True G140006
TU189510 lncRNA downstream 893197 9438226 ~ 9439147 (+) True G140008
XM_022677952.1 mRNA upstream 35448 8132286 ~ 8509323 (+) True clstn2
XM_022677950.1 mRNA upstream 530146 7948922 ~ 8014625 (+) True LOC103023286
XM_022677948.1 mRNA upstream 633000 7741723 ~ 7911771 (+) True carmil3
XM_022677949.1 mRNA upstream 633000 7741725 ~ 7911771 (+) False carmil3
XM_022677668.1 mRNA upstream 815457 7721740 ~ 7729314 (+) True LOC103026570
XM_022677953.1 mRNA downstream 26804 8571833 ~ 8573911 (+) True LOC111194298
XM_022677956.1 mRNA downstream 478068 9023097 ~ 9025014 (+) True LOC103021839
XM_022677955.1 mRNA downstream 478068 9023097 ~ 9024279 (+) False LOC103021839
XM_022677669.1 mRNA downstream 574139 9119168 ~ 9125820 (+) True LOC111194194
XM_007241079.3 mRNA downstream 616376 9161405 ~ 9162523 (+) False LOC103030954
TU188724 other upstream 1498483 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 2277384 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 2302200 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 2384605 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 2400870 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 616304 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 677580 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 994746 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 1198669 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 1444889 9989918 ~ 9990296 (+) True G140258

Expression Profile