RNA id: TU189568


Basic Information

Item Value
RNA id TU189568
length 1889
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G140050
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9485374 ~ 9489112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaccctattgtttttgctaagatttttcttcttcttattattattattattattattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaaaaactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactgtttctcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatcttcaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651019.1 lncRNA upstream 32808 9447134 ~ 9452566 (+) True LOC111194300
TU189517 lncRNA upstream 45161 9439433 ~ 9440213 (+) True G140012
TU189510 lncRNA upstream 46227 9438226 ~ 9439147 (+) True G140008
TU189508 lncRNA upstream 259191 9225973 ~ 9226183 (+) True G140006
TU189444 lncRNA upstream 501656 8960530 ~ 8983718 (+) True G139958
TU189579 lncRNA downstream 43717 9532829 ~ 9562026 (+) False G140057
TU189580 lncRNA downstream 43717 9532829 ~ 9546228 (+) True G140057
TU189582 lncRNA downstream 43717 9532829 ~ 9535323 (+) False G140057
TU189583 lncRNA downstream 43717 9532829 ~ 9563624 (+) False G140057
TU189584 lncRNA downstream 43717 9532829 ~ 9563624 (+) False G140057
XM_022677958.1 mRNA upstream 38241 9440692 ~ 9447133 (+) False LOC103039571
XM_022677959.1 mRNA upstream 38241 9440695 ~ 9447133 (+) True LOC103039571
XM_022677671.1 mRNA upstream 261393 9220274 ~ 9223981 (+) True LOC103030224
XM_007241079.3 mRNA upstream 322851 9161405 ~ 9162523 (+) False LOC103030954
XM_022677669.1 mRNA upstream 359554 9119168 ~ 9125820 (+) True LOC111194194
XM_022677964.1 mRNA downstream 224451 9713563 ~ 9740992 (+) True klhl18
XM_015604331.2 mRNA downstream 293617 9782729 ~ 9794211 (+) True LOC103039200
XM_007229318.2 mRNA downstream 293617 9782729 ~ 9794211 (+) False LOC103039200
XM_007229316.3 mRNA downstream 321470 9810582 ~ 9812214 (+) True LOC103038676
XM_022677974.1 mRNA downstream 340790 9829902 ~ 9847321 (+) True fam217a
TU189503 other upstream 262218 9222609 ~ 9223156 (+) False LOC103030224
TU189488 other upstream 322869 9161333 ~ 9162505 (+) True LOC103030954
TU188724 other upstream 2439086 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 3217987 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 3242803 6238156 ~ 6242571 (+) True LOC103028159
TU189594 other downstream 50663 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 254586 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 500806 9989918 ~ 9990296 (+) True G140258
TU189875 other downstream 504474 9993586 ~ 9994066 (+) True G140262
TU189976 other downstream 821988 10311100 ~ 10326919 (+) False G140336

Expression Profile