RNA id: TU189582


Basic Information

Item Value
RNA id TU189582
length 2204
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G140057
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9532829 ~ 9563624 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aataaaacacattttaatggtGAAACTTCACAgatatgaaaacattttttggagTTCAGGGGAGTGGCTGCAGAACATGTGatatttaaagaatttattgTTCAGGCTATTTGAAACCAAGGGCTTTATTACAGAAAAGTGTTGCAACCAATCAAAATTACTTGGGTGGGGCAGGAGGAAACAAAACACATCCAAAAAAAGTCCTTCACAGTAGGCAAGAGTGGAGGGGAAGGAACAAAAATCCATAAGCATTTGTTTGCCTTTGTCCCGAAAAggaatcattaataatattaatatcaacatcgataaaaaaaataattacaagtTAAAAAGAGGCCAACGCCACTTGGCGAAGTGGTCAGCAGCTGTTTCTGTAAGTGTGAGACAGAAGCAAGGGAAAGGGTCGTAGAACTGGCGGATGATCGTGTCTATGCAGAGAGGTCGCTGTTGTCAAACCGCTCCTGATCGTACACCTCTGCAATAACCTTACGACCTCCAAACCAGCGATTATTGAGGGCCTGAATGGCCTTGTTCATCTCAGACGCTGCTGAAAACTCCACAAAGATTTTTACAATGACCTCAGCATCCTCCTCTTCGCCCTGCTTCTCCTGGTAAATAATCACTCTGTTGACTGCTCCAAACTTGCCACATTCTTCCGTTACTTCGCCCTCCAGGTCGTCATCTATATCCTCTGGCCCAACCATATTTCTGAGCACCATAACTGTCGACTCCTGCTTTCTCAGCAGTTTTTGCATGACCATATGTCTGGCGCTGCTGCCGGAGATGCTCATATGCTCCTGTTCACTGAGCATCTCTTGACCCGTGCCGTCTTGAGCagcttcttcctcctccttttctttttccttcttgGCTTCCTGGGCAGCAGCCACTGCAGCAGAAATCACCGGCGGAGAGGCCAGCACTGGGTTTACCAGACCCACCTGGGGCAGAACGGGCCGAGCGGGAGTCACGCCTGCACAGAGAGGCTGAGGTCAGAGAGTTCATTACAGATATCAGGAGGACAATATGAAGCCCTGTGAGGCCTGTAAAAGCCCTCTTAATGttttgtgtgagagtgtgtgtgttttgtgtaggTGACTAATCAGGCAACAGGGGCTCATTTAATAAATCTGGCTTCAAAGTTTaaccacaaacaaacagactCTTGGGTTAATAACAAGATGATTTAAGTAGCATGTAGGGTGATAATGTATGGGAGTCCATATAGATgtgtatattttcatatatgttttaataagaTGTGCTTCACACCCACCAGGCGTAGCTGCTTATTGCTATGGTGGGCCAGTTTCCTAATTAGTACTAGTACCTAGTACATTTCTCCATGTACAGTAAATGTTAGTACTTAAAACTAATGGAAGAGTGGGGGCGAGCTGTTCAAATGCTCAACTACAAAAGCTGAGAAAGGTGGGGCTCAGGCTTCCTCCTGATGGACTGTTATACTCCATCCCATCCCTCCACCCTTAACAGCCACTTGCCCTCCTCTCATGCCTGTCATCTCAGACGAAAGGTCAAGATTCAactccacaaaaacacacaggatCTGAGACTCACTGGCCAATGGGAATGAGAGATTTGTTTATGAGGGGAGGGGCTAGAAACAGTCCTCTTCACACTTGGTTGGTCAGTGTGCAGCAAAGGGAAGGGGTTAAGAGGCCACGGTCAGGGCGATCGTGGAGAGTAAAGACGGGGAggggaagagaggagagaaagaaaaggagaaaaaaaagagagaaagagacaaggagagaagagaaaataaaagagaatctATTAGTGGACAGGTCCCACGACACGCCATGTTAAACTATGTAATGTGTAGGAGACAACAGAATCCTGCAGGAGAGACAGGGTTTAACACCAGCTATTcggacacaaaaaaatattactgaTGGGATTTGAAAAAATGAAAGTGCAAAATGAGTCcaatcagtttcagtttctgcTGTGATTACTACTTGGTGCATATTTAACTCGATTACTAGATAAATACACTCAACTAAATGCAGGAACTGGGCAATTAAAGATGAACTATGACATACACGTGTTCTACCAGAGCTGGACAATAACtctaaatgataaaatgtgcaccaataacgGTGATGTTTGTAGGTTGACATCTGTTCTGTATGATCTGCATTGTTGGCAGTTCTCTGTGTCTTTAATTCTGATATCAATATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189551 lncRNA upstream 30582 9473816 ~ 9502247 (+) True G140042
TU189567 lncRNA upstream 43717 9485374 ~ 9489112 (+) True G140050
TU189568 lncRNA upstream 43717 9485374 ~ 9489112 (+) False G140050
TU189570 lncRNA upstream 43717 9485374 ~ 9489112 (+) False G140050
XR_002651019.1 lncRNA upstream 80263 9447134 ~ 9452566 (+) True LOC111194300
TU189590 lncRNA downstream 3055 9538378 ~ 9539308 (+) True G140060
TU189609 lncRNA downstream 55024 9590347 ~ 9591803 (+) True G140072
TU189611 lncRNA downstream 62150 9597473 ~ 9609161 (+) True G140074
TU189612 lncRNA downstream 67562 9602885 ~ 9609161 (+) False G140074
TU189748 lncRNA downstream 213373 9748696 ~ 9749098 (+) True G140169
XM_022677958.1 mRNA upstream 85696 9440692 ~ 9447133 (+) False LOC103039571
XM_022677959.1 mRNA upstream 85696 9440695 ~ 9447133 (+) True LOC103039571
XM_022677671.1 mRNA upstream 308848 9220274 ~ 9223981 (+) True LOC103030224
XM_007241079.3 mRNA upstream 370306 9161405 ~ 9162523 (+) False LOC103030954
XM_022677669.1 mRNA upstream 407009 9119168 ~ 9125820 (+) True LOC111194194
XM_022677964.1 mRNA downstream 178240 9713563 ~ 9740992 (+) True klhl18
XM_015604331.2 mRNA downstream 247406 9782729 ~ 9794211 (+) True LOC103039200
XM_007229318.2 mRNA downstream 247406 9782729 ~ 9794211 (+) False LOC103039200
XM_007229316.3 mRNA downstream 275259 9810582 ~ 9812214 (+) True LOC103038676
XM_022677974.1 mRNA downstream 294579 9829902 ~ 9847321 (+) True fam217a
TU189503 other upstream 309673 9222609 ~ 9223156 (+) False LOC103030224
TU189488 other upstream 370324 9161333 ~ 9162505 (+) True LOC103030954
TU188724 other upstream 2486541 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 3265442 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 3290258 6238156 ~ 6242571 (+) True LOC103028159
TU189594 other downstream 4452 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 208375 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 454595 9989918 ~ 9990296 (+) True G140258
TU189875 other downstream 458263 9993586 ~ 9994066 (+) True G140262
TU189976 other downstream 775777 10311100 ~ 10326919 (+) False G140336

Expression Profile