RNA id: TU189676


Basic Information

Item Value
RNA id TU189676
length 1774
lncRNA type intronic
GC content 0.38
exon number 2
gene id G140122
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9646410 ~ 9648315 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGGTAGGGGTAGAGCTGGTAGAGTAGTGAGAGATAGTGGGAGAAtaggagggagaggaggagtaaGAGGTAGGAGTAGAGCTGGTAGAGTTTGTGAGAGTTATTAGGATTTGTAAATTGTGTTAAGTATTTTAGcaatgggaaaaactgtaatgttAGGGTAATCTGCtttgtttttaatacagtactttCATTCACCAGCTCTAAAAAACTCGGGAAGTCTCATGTCATTCTTAGTCTCCTAAGTGCTGTCTGTGGCTGCAGTGAATTGCATCTTTATGACAACTTGATTATGTTGGCTCTGAGAGATTCTGTCAACAAAAAATTGTACTTTTAAGTTTTCAACATTGAGAGTTTGTCAATTACAAATTGTGATTTCCTTAGGTTCTAAACTTACTCACTCCCTAACCCCCCTATTCCCCTTTACACTGATATCATTGCTGAAGATAGATGGTGGTCATCTGTCTCTGCAGATAGTCAACATTGCATTCTTTGTTCATAAGTCATTTATATGATAATTTGAAATCCCAACCAAGGTGACTACCATCTGATAACAATCAACCCCCAATGATGATACCCCCATATACTCCTCCCTAAACCCTTTCCCATTCTCCCCCTGCTGCGTTCAAAGCAGTTTCTACTGTATGTAAAGTCCTACCTAAATGTCTTAGACAGtaacagtcagacagacaagTCAGATGGATTAGTCAGACATACACAGAGGGAGCAACAAGCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatcctgactcctgattcctgaaagctgaaTTTCTAACAGCTCTAACCAACTTTCCTATTCTTTCCAAATCATTTGGAAATCTGGACAGTCTGGGTGATAAAGTAATATGAGCTGATAATTACAGTGGTATGTAAAAGTTTGGGCagccctgatcattttcatgattttcctttataaattattggatgttcagatcagcatttttttgttaaatgcatcatatatcagatgaacacagtgacatatgagaagtgaaataaagtttataggatttacagaaagtgtgcaataatactttaaactaaattaggcaggtgcatacatttggggacccttgtcattttattgacttttatatttttagcactaattattggaaaacaaaatttgtttaataagctcgttgacccttgacctacatacacggGTAAATCTAATTATGATAAAGGGTTAATGTGGCTAGTTGCATGTTTTTGTCACTTTGTCACTGTGCATCCTTCAACTAATCAGTGCACTTTGCACAATgagaaactttacaggagagtaatgcagaagaagccaacagagtcacttgaggtatgctaCAGCTAAAGCACCTTAGGACAAGTCagtttcattttggaataaggactgctgaaactgataaaatggagttatttggaggaaaaagaacacagcatttcaCGACAAACACTtactccccacagtaaaatttggtggtggttcatcatgctgtggggctgtgggGTCAGTGCAAAGACTgtgaatcttgttaaagttgagggtcacatggatatcaaaatatcagcagattcttgcgAACAATGTTCAAAAATTAGTGACAAAGTTGAAGGTGTACTTTACACTGGGGTGTTACTGTTGTGTGTTACAGTAGCTGTGAGAGATACTGTAGTTGTGTTGAGCAGTCCTCATAAATCTGatctctatttaaaaagtgcaatttttttaacacttttaggtgTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189708 lncRNA downstream 2016 9640722 ~ 9644394 (-) True G140139
TU189702 lncRNA downstream 7773 9621607 ~ 9638637 (-) True G140137
TU189698 lncRNA downstream 25198 9620309 ~ 9621212 (-) True G140136
TU189695 lncRNA downstream 54593 9590307 ~ 9591817 (-) False G140135
TU189710 lncRNA upstream 17333 9665648 ~ 9670587 (-) True G140140
TU189717 lncRNA upstream 44181 9692496 ~ 9692814 (-) True G140146
TU189706 lncRNA upstream 57494 9705809 ~ 9706535 (-) True G140138
TU189762 lncRNA upstream 129962 9778277 ~ 9779566 (-) True G140181
TU189764 lncRNA upstream 133748 9782063 ~ 9782425 (-) True G140182
XM_022677961.1 mRNA downstream 82823 9532823 ~ 9563587 (-) False LOC103042138
XM_022677962.1 mRNA downstream 84356 9532823 ~ 9562054 (-) False LOC103042138
XM_022677960.1 mRNA downstream 84356 9532823 ~ 9562054 (-) True LOC103042138
XM_007241080.3 mRNA downstream 505320 9138794 ~ 9141090 (-) True LOC103031272
XM_007228673.3 mRNA downstream 578834 8986473 ~ 9067576 (-) True LOC103022255
XM_022677968.1 mRNA upstream 48840 9697155 ~ 9713580 (-) False LOC103044908
XM_007242797.3 mRNA upstream 48840 9697155 ~ 9700312 (-) True LOC103044908
XM_022677965.1 mRNA upstream 60968 9709283 ~ 9713591 (-) False LOC103044908
XM_022677966.1 mRNA upstream 60968 9709283 ~ 9713584 (-) False LOC103044908
XM_022677969.1 mRNA upstream 104349 9752664 ~ 9761502 (-) True bfsp2
TU189125 other downstream 2463627 7168965 ~ 7182783 (-) True G139706
TU188973 other downstream 3216091 6417385 ~ 6430319 (-) True G139587
TU188974 other downstream 3217065 6417385 ~ 6429345 (-) False G139587
TU188831 other downstream 3271701 6304969 ~ 6374709 (-) True G139487
XR_002651013.1 other downstream 3522285 6120119 ~ 6124125 (-) True LOC103026010
TU189726 other upstream 60974 9709289 ~ 9714037 (-) False LOC103044908
TU189989 other upstream 420185 10068500 ~ 10099769 (-) True G140342
TU189985 other upstream 449853 10098168 ~ 10099769 (-) False G140342
TU190197 other upstream 862774 10511089 ~ 10514807 (-) True G140472
TU190615 other upstream 1957920 11606235 ~ 11610529 (-) True G140772

Expression Profile