RNA id: TU189706


Basic Information

Item Value
RNA id TU189706
length 702
lncRNA type intronic
GC content 0.43
exon number 2
gene id G140138
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9705809 ~ 9706535 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttactttttcaggaatcaggaaggtcagagtgttttcatcaacagtgagagctgtgaggagaacgtgaccctgagtggcagagaagcttcactgctgttctgggaccagtgcatatgaactaggagacaagctatctgagtgaagtgctgggaacctctcctcagatagcCAGCGCATGCCTGTTCTACACGCCGTAAAGTCGCACAGGCCAGAAGATCTTTCCATCCACTCTTTTCCACTGTTTCatcttctcacagactttaggacacttaaggactgtctgctgtgttcatgaaggacacagagctgaacaacatcatgataagaacctgttgctcagacaggctggagcgGATCACGTCATTGGAACTGGACAACAAACTGTTTACTGGACTCTGCTGACGTAATCATATGATAAGTTCTGTCCAATCACATGTCATTTGCaaaatgtataactgcttggatgaagtctgaggagttctctctgtccctcgactggctttagtttctttctctttctttctctctctctctctctctctctctctctctctctctctctttctctctctctctctttctctctctgggttgcgAATGTGATGATCTATCGAGATTGTATTcgttgatgtacttttactcttttctaatatatatcttttaatttttgttccttttatatatctgtaatgctgaaa

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189717 lncRNA downstream 12995 9692496 ~ 9692814 (-) True G140146
TU189710 lncRNA downstream 35222 9665648 ~ 9670587 (-) True G140140
TU189676 lncRNA downstream 57494 9646410 ~ 9648315 (-) True G140122
TU189708 lncRNA downstream 61415 9640722 ~ 9644394 (-) True G140139
TU189702 lncRNA downstream 67172 9621607 ~ 9638637 (-) True G140137
TU189762 lncRNA upstream 71742 9778277 ~ 9779566 (-) True G140181
TU189764 lncRNA upstream 75528 9782063 ~ 9782425 (-) True G140182
TU189768 lncRNA upstream 83473 9790008 ~ 9794211 (-) True G140186
TU189809 lncRNA upstream 114769 9821304 ~ 9821961 (-) True G140214
XR_002651020.1 lncRNA upstream 141046 9847581 ~ 9849546 (-) True LOC111194301
XM_007242797.3 mRNA downstream 5497 9697155 ~ 9700312 (-) True LOC103044908
XM_022677963.1 mRNA downstream 33595 9574340 ~ 9672214 (-) True LOC103042459
XM_022677961.1 mRNA downstream 142222 9532823 ~ 9563587 (-) False LOC103042138
XM_022677962.1 mRNA downstream 143755 9532823 ~ 9562054 (-) False LOC103042138
XM_022677960.1 mRNA downstream 143755 9532823 ~ 9562054 (-) True LOC103042138
XM_022677965.1 mRNA upstream 2748 9709283 ~ 9713591 (-) False LOC103044908
XM_022677966.1 mRNA upstream 2748 9709283 ~ 9713584 (-) False LOC103044908
XM_022677969.1 mRNA upstream 46129 9752664 ~ 9761502 (-) True bfsp2
XM_007229312.3 mRNA upstream 115980 9822515 ~ 9830153 (-) True LOC103037289
XM_007229311.3 mRNA upstream 115980 9822515 ~ 9830143 (-) False LOC103037289
TU189125 other downstream 2523026 7168965 ~ 7182783 (-) True G139706
TU188973 other downstream 3275490 6417385 ~ 6430319 (-) True G139587
TU188974 other downstream 3276464 6417385 ~ 6429345 (-) False G139587
TU188831 other downstream 3331100 6304969 ~ 6374709 (-) True G139487
XR_002651013.1 other downstream 3581684 6120119 ~ 6124125 (-) True LOC103026010
TU189726 other upstream 2754 9709289 ~ 9714037 (-) False LOC103044908
TU189989 other upstream 361965 10068500 ~ 10099769 (-) True G140342
TU189985 other upstream 391633 10098168 ~ 10099769 (-) False G140342
TU190197 other upstream 804554 10511089 ~ 10514807 (-) True G140472
TU190615 other upstream 1899700 11606235 ~ 11610529 (-) True G140772

Expression Profile