RNA id: TU189748


Basic Information

Item Value
RNA id TU189748
length 403
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G140169
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9748696 ~ 9749098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaatagaaataaaaagaaataaatatataatctaaatctaaatgagtgggagacactatatgtacaatacaacaaaaacacaatagacatttgtgagacagaagataatagtgcaatattaatggtgattaagatcaagtgacaatataaatagaacccgtataacagtagtgcaatgttgtatctagcttaaggctggtaaagttcttaaagttcccagttcttggggaattaaagtgtgtatgacagtgcagcgtaacagtagtgcaggtattgggtgtgtagtgcaggtccttttacaaaagttacagtactgtgtgtgttctagtgcagagtttcagtactgtgttggtgGGAGGATGTGGGGTCAGGatgatgagagtgtgtgtgctgtgggcaggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189611 lncRNA upstream 139535 9597473 ~ 9609161 (+) True G140074
TU189612 lncRNA upstream 139535 9602885 ~ 9609161 (+) False G140074
TU189609 lncRNA upstream 156893 9590347 ~ 9591803 (+) True G140072
TU189583 lncRNA upstream 185072 9532829 ~ 9563624 (+) False G140057
TU189858 lncRNA downstream 160533 9909631 ~ 9910544 (+) True G140245
TU189862 lncRNA downstream 176035 9925133 ~ 9926043 (+) True G140249
TU189864 lncRNA downstream 177211 9926309 ~ 9926576 (+) True G140251
TU189868 lncRNA downstream 191930 9941028 ~ 9942279 (+) True G140255
TU189895 lncRNA downstream 349070 10098168 ~ 10103457 (+) False G140274
XM_022677964.1 mRNA upstream 7704 9713563 ~ 9740992 (+) True klhl18
XM_022677958.1 mRNA upstream 301563 9440692 ~ 9447133 (+) False LOC103039571
XM_022677959.1 mRNA upstream 301563 9440695 ~ 9447133 (+) True LOC103039571
XM_022677671.1 mRNA upstream 524715 9220274 ~ 9223981 (+) True LOC103030224
XM_007241079.3 mRNA upstream 586173 9161405 ~ 9162523 (+) False LOC103030954
XM_015604331.2 mRNA downstream 33631 9782729 ~ 9794211 (+) True LOC103039200
XM_007229318.2 mRNA downstream 33631 9782729 ~ 9794211 (+) False LOC103039200
XM_007229316.3 mRNA downstream 61484 9810582 ~ 9812214 (+) True LOC103038676
XM_022677974.1 mRNA downstream 80804 9829902 ~ 9847321 (+) True fam217a
XM_022677972.1 mRNA downstream 112914 9862012 ~ 9865937 (+) False LOC103040953
TU189643 other upstream 3341 9743698 ~ 9745355 (+) True G140103
TU189594 other upstream 207886 9539775 ~ 9540810 (+) True G140062
TU189503 other upstream 525540 9222609 ~ 9223156 (+) False LOC103030224
TU189488 other upstream 586191 9161333 ~ 9162505 (+) True LOC103030954
TU188724 other upstream 2702408 7041674 ~ 7046288 (+) False LOC103044361
TU189871 other downstream 240820 9989918 ~ 9990296 (+) True G140258
TU189875 other downstream 244488 9993586 ~ 9994066 (+) True G140262
TU189976 other downstream 562002 10311100 ~ 10326919 (+) False G140336
TU190105 other downstream 646422 10395520 ~ 10399976 (+) True G140402
TU190104 other downstream 649283 10398381 ~ 10399976 (+) False G140402

Expression Profile