RNA id: TU189975


Basic Information

Item Value
RNA id TU189975
length 1012
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G140336
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10311100 ~ 10345471 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTttgaatcttttttatttaaacagatgttttaatgtttttcattggacagaagCTTCATCAGGTAACAGAAGAGGAAGAATAGCTGATTATTTTCTTCTCATATTAAAGAACTGCTGCTGAGTGTGTGACCACACCACGGTCCTCACAACCAGACAGAGAGCTCAGAGAGTTAACTTACAGCtcaaagtaacaaagtaaaaaaaaaagagtgagttTTTAGCTGTGAttggtgcagtgtgtgtgtgtttggagagtGTGTGAAGTATGTAATGGTCACTGAGGGTTCTGTAGAGGAATGTGTAATGAAGTGTAAATGGTTCAATCATTTGTTGCACCGGGGTGCTAACGGACTCCTCACCACCAACATCTGTGACCCCATATCTGCTGGGCTGGAatgagtgctgtgtgtgtgtgtgtgtgtttctgtagatGTAGTGTTAAAGTATGTAATTTGGTCATTAGTCTCTGAGGTCCATTTAATGctacaccaaagcaaccatgaCAGTACAGTACAAAAACCTTATATCTCCAGAACTGCAACAGGAGAAGGAAAACCTTCAGttgattttaatgtaaaaatacattctaggaacttttaaacatttctatttgttaTTGTTCaggtttatataaatataaagctttttgcatgacagcaagcttaacttatttaaatatatATTTAAATATATAGACTTAAAATAGTAAACTAACGCGAACTCACCCGCGGTAGTAGGCCTTCACCCGGACCTGGTGCTGGTTCTCCCCCGGGTGGGTCGCAGTGCTGTCCCGCACCGTCGGCATCGTGAGCCGCCAGCCAGCGAAGCCCCGGAGAAAACCGCCTTATCCGGCTCGACTACGGTTTAAGCTAGTGCCGGTCAGCGGAGCCGGTCCTCCTGGGTGTGTCCGCGGAACAGAACGGAGCTGTAAACGGGCTAAAGGCAGGCTGTGAGCGGATCTGACCGAAACACAACAGCGGCGGCCTGGTCTGGAGAACACAGCCGGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189970 lncRNA upstream 3385 10307420 ~ 10307715 (+) True G140331
TU189939 lncRNA upstream 32589 10276877 ~ 10278511 (+) True G140305
TU189923 lncRNA upstream 109261 10198052 ~ 10201839 (+) True G140297
TU189897 lncRNA upstream 155052 10098168 ~ 10156048 (+) True G140274
XR_453208.3 lncRNA upstream 181056 10125320 ~ 10130044 (+) True LOC103034722
TU190071 lncRNA downstream 15520 10360991 ~ 10361377 (+) True G140391
TU190073 lncRNA downstream 25981 10371452 ~ 10374169 (+) True G140392
TU190072 lncRNA downstream 27851 10373322 ~ 10374169 (+) False G140392
TU190077 lncRNA downstream 30776 10376247 ~ 10445727 (+) True G140394
TU190103 lncRNA downstream 45920 10391391 ~ 10394260 (+) True G140401
XM_007234361.3 mRNA upstream 34880 10272014 ~ 10276220 (+) True gpr160
XM_007234358.3 mRNA upstream 65098 10235722 ~ 10246002 (+) True sec62
XM_015601595.2 mRNA upstream 76840 10219573 ~ 10234260 (+) True samd7
XM_007234365.3 mRNA upstream 76841 10219573 ~ 10234259 (+) False samd7
XM_022677981.1 mRNA upstream 98770 10210482 ~ 10212330 (+) False LOC111194303
XM_022677984.1 mRNA downstream 5425 10350896 ~ 10369990 (+) False phc3
XM_022677986.1 mRNA downstream 5425 10350896 ~ 10369990 (+) False phc3
XM_022677985.1 mRNA downstream 5425 10350896 ~ 10369990 (+) False phc3
XM_022677987.1 mRNA downstream 9228 10354699 ~ 10369990 (+) True phc3
XM_007236323.3 mRNA downstream 81799 10427270 ~ 10444540 (+) True sppl2b
TU189875 other upstream 317034 9993586 ~ 9994066 (+) True G140262
TU189871 other upstream 320804 9989918 ~ 9990296 (+) True G140258
TU189643 other upstream 565745 9743698 ~ 9745355 (+) True G140103
TU189594 other upstream 770290 9539775 ~ 9540810 (+) True G140062
TU189503 other upstream 1087944 9222609 ~ 9223156 (+) False LOC103030224
TU190105 other downstream 50049 10395520 ~ 10399976 (+) True G140402
TU190104 other downstream 52910 10398381 ~ 10399976 (+) False G140402
XR_001518341.2 other downstream 81795 10427266 ~ 10443367 (+) False sppl2b
TU190266 other downstream 453074 10798545 ~ 10798891 (+) True G140520
LOC111194305 other downstream 968062 11313533 ~ 11314374 (+) True LOC111194305

Expression Profile