RNA id: TU190261


Basic Information

Item Value
RNA id TU190261
length 337
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G140515
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10755904 ~ 10756240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattaaggacgttaagctctttttagctgctccggtttttgtggtgctgctgctttctcttttagagcttagattctctgcccgaacccgacctgacccgaggaccgacccgaaatcaggctcctatttttattttatataaagctctggtgtgataatcacaatgttgctaagtaaccaattattattgttcactaaagcgaacgaaatagcgaaaactgaaagtgaaaaaacatttgtgttaactgaatctaataaaaacggtaattaaaaggaaaaaacataactatctcgaactgtattttgtgtttataaaactaactaaaacgaactgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190191 lncRNA upstream 16907 10738717 ~ 10738997 (+) True G140466
TU190183 lncRNA upstream 180126 10573168 ~ 10575778 (+) True G140460
TU190184 lncRNA upstream 180126 10573168 ~ 10575778 (+) False G140460
TU190185 lncRNA upstream 180126 10573168 ~ 10575778 (+) False G140460
TU190172 lncRNA upstream 221124 10527765 ~ 10534780 (+) True G140457
TU190262 lncRNA downstream 2015 10758255 ~ 10758470 (+) True G140516
TU190290 lncRNA downstream 193015 10949255 ~ 10949485 (+) True G140543
TU190298 lncRNA downstream 222334 10978574 ~ 10979090 (+) True G140550
TU190306 lncRNA downstream 247577 11003817 ~ 11004526 (+) True G140556
TU190315 lncRNA downstream 371048 11127288 ~ 11128909 (+) True G140563
XM_022678007.1 mRNA upstream 5229 10683596 ~ 10750675 (+) False LOC103039003
XM_022678006.1 mRNA upstream 8674 10683588 ~ 10747230 (+) True LOC103039003
XM_022678004.1 mRNA upstream 75815 10558457 ~ 10680089 (+) True LOC103042199
XM_022678005.1 mRNA upstream 75815 10558458 ~ 10680089 (+) False LOC103042199
XM_022678000.1 mRNA upstream 203303 10530992 ~ 10552601 (+) False LOC103039831
XM_015603253.2 mRNA downstream 449310 11205550 ~ 11308230 (+) True LOC103038209
XM_022678011.1 mRNA downstream 449310 11205550 ~ 11308230 (+) False LOC103038209
XM_022677705.1 mRNA downstream 563530 11319770 ~ 11330660 (+) True LOC103038536
XM_022677706.1 mRNA downstream 588351 11344591 ~ 11371098 (+) True LOC103039371
XM_022678012.1 mRNA downstream 661651 11417891 ~ 11426827 (+) True LOC111194306
XR_001518341.2 other upstream 312537 10427266 ~ 10443367 (+) False sppl2b
TU190105 other upstream 355928 10395520 ~ 10399976 (+) True G140402
TU190104 other upstream 355928 10398381 ~ 10399976 (+) False G140402
TU189976 other upstream 428985 10311100 ~ 10326919 (+) False G140336
TU189875 other upstream 761838 9993586 ~ 9994066 (+) True G140262
TU190266 other downstream 42305 10798545 ~ 10798891 (+) True G140520
LOC111194305 other downstream 557293 11313533 ~ 11314374 (+) True LOC111194305
LOC103039058 other downstream 581721 11337961 ~ 11338482 (+) True LOC103039058
LOC103029197 other downstream 621882 11378122 ~ 11378859 (+) True LOC103029197
LOC103029510 other downstream 623742 11379982 ~ 11381020 (+) True LOC103029510

Expression Profile