RNA id: TU190315


Basic Information

Item Value
RNA id TU190315
length 1324
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G140563
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11127288 ~ 11128909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCATTTTGAACCACATGGTCACCCTTTAATCACTGTAGAATAAAGCAGTCTTTGTCTTTGTTagacagtaaaaaacaaaagtctGAACTTTTATTTGTACTGTGTGTTTCCACTGCTTTGAATCAAGCAGCAACATTTAGTACAAAAGAAAGAGCTTGGCCAAACTTCGCTCTCCAGCTAAATCAAAACGAACAGATTCTGTAGACATCATAAATACTTGTGCAGTGTCATTGATAAACTCGTACTACAGGATAGAAGAAGGATCAGCAACTGGACTTCAAGATACTCTTTATATGCATTGTTCTCAATAATATACATCCTGAGATACAAAAAAATGCCCAAATTAAATAACTtccgtttttttctttttcctaaaAATACTGCAACAGACGTgatcattaaaacacacacacaccaatattATCATCAATCCCCTTCCCACCGTTTACAGACTTCACAATGTCACCCATACAAAAAAACGGACTAGATTTTATACACCTATGACGTAGAATGTTACAAAAATAGTGCCGGTAAAAATGGCCCACCAACTTCAACCAACTTTAGCACTCTGaggccactttttttttgtttgcatctagtcatatgattattattattattattattaatattattattattcatctaATTCACactcaaatctgataaaaatctgtaatatatatatatatttactctctcttttcGAACAATTCTCTGATAAAAGATTTCACTGGTCCTTCGGCAGCTGTGCAGCAACATTTGGGTTGAGAGGTTCCTGCTCCCAGAACTTCGTATTgtccttttcctctctttctgcagTAAATTCAAgttcaaaaaaacaaagaaaaacaacaacaatgaaAGATATGTACATTCCAAGCTGATTAAGTCACTGCTTTGTTTAGtatttgctttctctctttctttttctgtaaagGTTGGTTTAGTGTAAGGACGGCAGCACAGTAGAGCTCAGAGGACGAGAGTTAAAAGAAGCAAGAGTTAGCGTGCGACGGTTGCTTTGGTACAAATCGATCATCATCTTCGCTGTCCTGCACCCGAAGGTTCCTGATGACAGCTGGAAGAcaataagCACGTCCACGTGGAATTCTTTCAGAACCAGCAGGGACGCACAGGAAAGCAGTCCTGTGCCTTCGTCACGGACGTCCCGCAAACGCCcgcctctcactcttcctcctcatcatcGTCATTCTCCTCCGTCAGTTCAACGATGTCGTCCATCCGGCCAGTTCGGACTTCGTTCATGGGGGCGGAGTCCTCGCCTTCGTTGGCCACCTCTCCGTCACagtctttcttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190306 lncRNA upstream 122762 11003817 ~ 11004526 (+) True G140556
TU190298 lncRNA upstream 148198 10978574 ~ 10979090 (+) True G140550
TU190290 lncRNA upstream 177803 10949255 ~ 10949485 (+) True G140543
TU190262 lncRNA upstream 368818 10758255 ~ 10758470 (+) True G140516
TU190261 lncRNA upstream 371048 10755904 ~ 10756240 (+) True G140515
TU190475 lncRNA downstream 314932 11443841 ~ 11444206 (+) True G140670
TU190439 lncRNA downstream 323110 11452019 ~ 11455807 (+) True G140644
TU190476 lncRNA downstream 325661 11454570 ~ 11454829 (+) True G140671
TU190441 lncRNA downstream 326928 11455837 ~ 11478740 (+) False LOC111194237
TU190487 lncRNA downstream 372147 11501056 ~ 11517675 (+) False G140676
XM_022678007.1 mRNA upstream 376613 10683596 ~ 10750675 (+) False LOC103039003
XM_022678006.1 mRNA upstream 380058 10683588 ~ 10747230 (+) True LOC103039003
XM_022678004.1 mRNA upstream 447199 10558457 ~ 10680089 (+) True LOC103042199
XM_022678005.1 mRNA upstream 447199 10558458 ~ 10680089 (+) False LOC103042199
XM_022677998.1 mRNA upstream 574687 10530993 ~ 10552601 (+) False LOC103039831
XM_015603253.2 mRNA downstream 76641 11205550 ~ 11308230 (+) True LOC103038209
XM_022678011.1 mRNA downstream 76641 11205550 ~ 11308230 (+) False LOC103038209
XM_022677705.1 mRNA downstream 190861 11319770 ~ 11330660 (+) True LOC103038536
XM_022677706.1 mRNA downstream 215682 11344591 ~ 11371098 (+) True LOC103039371
XM_022678012.1 mRNA downstream 288982 11417891 ~ 11426827 (+) True LOC111194306
TU190266 other upstream 328397 10798545 ~ 10798891 (+) True G140520
XR_001518341.2 other upstream 683921 10427266 ~ 10443367 (+) False sppl2b
TU190105 other upstream 727312 10395520 ~ 10399976 (+) True G140402
TU190104 other upstream 727312 10398381 ~ 10399976 (+) False G140402
TU189976 other upstream 800369 10311100 ~ 10326919 (+) False G140336
LOC111194305 other downstream 184624 11313533 ~ 11314374 (+) True LOC111194305
LOC103039058 other downstream 209052 11337961 ~ 11338482 (+) True LOC103039058
LOC103029197 other downstream 249213 11378122 ~ 11378859 (+) True LOC103029197
LOC103029510 other downstream 251073 11379982 ~ 11381020 (+) True LOC103029510
TU190456 other downstream 251189 11380098 ~ 11383505 (+) True G140659

Expression Profile