RNA id: TU190468


Basic Information

Item Value
RNA id TU190468
length 2433
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G140666
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11532819 ~ 11535275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGTCCACCTgggtatttatattttattactgaaAATGATAAGACAGTGCTGTTGACAATACTGTATcattctcttttcatttttaatgtattgatGGTCAATAAGGGCTGGCTGGTAAACCGCGGGAGAAAACCAGGAGCAGGCTTGCGTCTTTCAGCTGAATGAGTCCTTAAAGGCCTGGGCTTGTATCGATCAGTCGTTCCAGAGTAAGAGCTCTGACAAGGGAagagatttttttccccctcttagttcatttttttcagaaggGGAAGGAGTGTCCAACTTTAGACCAGTTTGGTTCTTTTCTTACACTCTTAAAACAAAAGGATGCTTTAGATAGTTCCTTGAGGGATGCCACAAAAGAACCATTGACTACTGTTTGGAAAAGAAGTGGGTATCCAGATTTAGTCTTAGAGACTCTGTCCAGGGCAGTTCTGTGATTGTCCTTCCAAGATATACATGTACTTTTAAAGGGTGCTTCAGATGGCTCCTTGAGAGATGCCACAAAATAACCCTTTGCTACTGTTTGGAAAATAAGGGAGTGTCCAGATTTAGTTTGAGAGAGACTTTATCCAGGACAGCTTGTTGCATTTCCTGCcaagatatacatatatttttaaaacaacaggTGGCTTTAGATGGTTCCTTGAGGGATACCACAAAAGAACCCTTGAGAACCCTATTGTTTGGAAAAGgagtttagatttagatttagtcCTAGCAGAGACTTTGTCCAGGACAGTTTGGTGCTTTTCCTGACAAGATGTACCTACACTCTTGAAAACAAAAGGGTGCTTCAGATGGTTCCTTAAGGAATGCCACAAAAAACCCTTGACTATTGTTTGAAAAATAAGTGGGTGTCCCGATTTAGAGTCTTAGAGACTTTGTCCAGGACAGTTTGTTGCATTTCCTGCCAAGATGTATGCATTTTTTTGAGGGATGCCACAATAGAACCCTTTGCTACTGTTTGGAAAAAGAGATGGTGTCCAGAATGGGTCCTGAAGTGACTTTCTGTACAGCACAGTTATAGCACAGGTGATTTTCCTGCCAGGAACATTACCTAACTGTACCTAAAATAATCGGGTGCTGCTTTAGATGGTTCCATGGGAGAtgccatagaaaaaaaatatatatatatatgtttataattaaGATGTCTTGAAAAAGTCTGAAGACTAATCGCTTGTTGCTAATGTtccttaataatataataatttaaaaatgctcAATAACAAACATGGCTCTAAATGGAGCCAGATGGTCTTTTAAAGTTCTTCTATGGCAGGGTTCTTCAATCCTAGCCGTGACACCCCCCTAACCTGCAaatttgatgattttggcttctCCTTCTATTAACACACCTCATTTAActaattaacacattaacaagTCATGTAGGAGTTGCAGTGGGTGTGGTAAAGCTGGTAATTGACTAAAATGAGCTGGGCAGGGGTGTGCCAAGACCCGGATCAGGACTGGGGAACAAAAAGCAAGAAAACTGGAATATTTCCTTGCTTAAACACTTAGCAAATTGCTCTGGACACTTCTAGTTTCTGACAAATGAATGAACTGAATAGATATGAGATAAGGAGTGTCCATCTGAACACCTCAGCTGTTTAAAGAGTGAGGGGAGGGGGAAAGGTGCAATTGGACTTCATCAAGCTCCAGCTTGGCTGGAATGAAAACCTATAGGCTTAAAAGTCTCTAGGGGGTAAGACTGGACACTCCTGCCCTAGATCAGCACTCTCACTCTGAGACGACTGAACATACAGACCCAGGCTCCTGTCAGAGAGCCTTACTGTACAGTGCAAGTGTGAGTGGTGAATTGTCTCGTATGAGGAAAGTTAGTCAGAGACAGGGGGACAGAGGGACTCCAGGCTGATGAGAAGAGCCGTAGACATCAATACAGatacaaaccaaaaaaatgaaaataaaaagtgtccAAACATCTGCTGTGCTGCTGGCAGAGGGTGGGTGCGCTTGCACAAACGAGGGCTTTAACTGATGTATATAGCTCACACTAACTCTCTATGCTAAATACCACCACTAAGGATGAGTCCAGCAGTGTTAGACGGcatgtctgtcttttttttttcttcttcttcttcttcttctttatcgactttttttttgttaatcttttcctttttttttccttttctttttcaagtAACTAAAAATGTTCCACTCCGCATGTTAATATAATCAattcaaaaacaaaactgaGGGAGGGTTTTTATATGGTAACAAGTACACAAGccaacagctttaaaaacagcagGGTGATACTGTACTGGGACCCTTTCGTGCTCACTTTAGCCAGCTTTCAATCAAGAACAAATATATCATATGCAAGTTTAATGATAACATTAATTATAATCAGAATAATCTGCCTCATGCCTTGTAAACTAGGAAACAATCAGAGCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190488 lncRNA upstream 12807 11501056 ~ 11520012 (+) False G140676
TU190486 lncRNA upstream 12807 11514965 ~ 11520012 (+) True G140676
TU190487 lncRNA upstream 15144 11501056 ~ 11517675 (+) False G140676
TU190425 lncRNA upstream 19398 11506664 ~ 11513421 (+) True G140637
TU190441 lncRNA upstream 54079 11455837 ~ 11478740 (+) False LOC111194237
TU190503 lncRNA downstream 34726 11570001 ~ 11570202 (+) True G140688
TU190513 lncRNA downstream 94141 11629416 ~ 11635600 (+) True G140695
TU190640 lncRNA downstream 281291 11816566 ~ 11819156 (+) True G140791
TU190645 lncRNA downstream 300211 11835486 ~ 11836832 (+) True G140795
TU190648 lncRNA downstream 301898 11837173 ~ 11841898 (+) True G140796
XM_022678014.1 mRNA upstream 1912 11521440 ~ 11530907 (+) True nol7
XM_022677709.1 mRNA upstream 39113 11481749 ~ 11493706 (+) True LOC103022687
XM_022677707.1 mRNA upstream 97249 11433551 ~ 11435570 (+) True LOC103030163
XM_022678012.1 mRNA upstream 105992 11417891 ~ 11426827 (+) True LOC111194306
XM_022677706.1 mRNA upstream 161721 11344591 ~ 11371098 (+) True LOC103039371
XM_007232509.3 mRNA downstream 40837 11576112 ~ 11607386 (+) False retreg1
XM_007232510.3 mRNA downstream 56538 11591813 ~ 11607386 (+) True retreg1
XM_022678016.1 mRNA downstream 108761 11644036 ~ 11655408 (+) True LOC103030795
XM_022678018.1 mRNA downstream 137333 11672608 ~ 11754085 (+) True LOC103026935
XM_022678017.1 mRNA downstream 137338 11672613 ~ 11754085 (+) False LOC103026935
LOC111194237 other upstream 76809 11455485 ~ 11456010 (+) True LOC111194237
LOC111194307 other upstream 80213 11451935 ~ 11452606 (+) True LOC111194307
LOC111194236 other upstream 81876 11450374 ~ 11450943 (+) True LOC111194236
LOC103030487 other upstream 93866 11438421 ~ 11438953 (+) True LOC103030487
LOC111194235 other upstream 103448 11428868 ~ 11429371 (+) True LOC111194235
TU190829 other downstream 702713 12237988 ~ 12240625 (+) True G140931
TU190827 other downstream 843721 12378996 ~ 12381554 (+) True G140930
TU191019 other downstream 1206198 12741473 ~ 12743453 (+) True G141086
TU191033 other downstream 1307539 12842814 ~ 12849942 (+) False LOC103029537
TU191361 other downstream 2320328 13855603 ~ 13858605 (+) True G141361

Expression Profile