RNA id: TU190825


Basic Information

Item Value
RNA id TU190825
length 1803
lncRNA type intronic
GC content 0.50
exon number 4
gene id G140930
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12378996 ~ 12381554 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTGTGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTTCGGGTGCAAAGTAACCCCAAGCTTCGACTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCATCGGTCCTCCTTCCTCGCCCCTCTCGATGGGTCTTGAAGCCATGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCGTTCTTTCATTTCCCGCCTCCTCCGCTTGGCTTTTTCGTCCGAGCCCTCCACCATTCGTTATGCTCAACTGATACTGCACGTCAGAGCTCCATTTCTGGCTGTGCCTCCTCTGCAATCGAACGGGTTTTTCTTCTACGCCAACGCAGCTTCCAGCTCTTTTGATATTAAGCTATTCACAGATGCCGCTCCTTCCTCTGGTCGCTTCTGCTTGGCCGGAGAACTTCATCTGCTCCGCCGCGCGATTCTTCTGCGCTCTCTGGACTTATATGCGGTCCTCGTCGCTGCCCTCCTTTGGggacatgaatggtcaaaatctATTCTACTCCACTCTGATCAATCTCGCCGCAGtccacatcaaaaaaaaaaaaaaaagttgctccAAATCGCTAGAAATCTTGCCTTTTATCCGTCGTCTCACTTGGCACTCCATTAAGCATCAGTTCACCACTAAAGCTGTTCACACCTCAGGTCCATTTAATTCTATCGCTGATAGAAtttaattctattctttttcgtTTTCAGTTACAGAAATTCAGATCCTTGGCTCCGCATGCAAATGCAACCCAACCTCGGTACCTTCATTTTCACAAACTACACTTCACCTAACCCCCGTGTAAACGAACTGATCTTCCAAGCTCAACAAACCATCCTTTCAGCCGTCCTTCTACTTAGATTCCTCAGATGCTCAGAATTTACTTCCCTTAAAATCTCCCACAACTCCTTCTCAGCCCCTAATTTCAGATCTCATCATCCTTGACTCAGATACCCTTACCTTCAAGAATGAAGCAAACGGACCAAATTGGCAAAAACCACGATCCTCTATCTATTCAAACTTGACTCACCCCTCAGCCCGTACGAACCACTCGTCCACCACTTAATCTCCGCCTCTTTCAACAAGCATCACCTTTAGATCCTCTGTTCACAACGGAATCTAGTAGTATAATCTCAAAGCACTGGTTCCAACACATCTCCGTCGCATCCTTTCTCCCAGTAGTTACTCACCAGATCAATTCTCCGCCCACTCAGTTTACATCGTGCAGCATCCAACGCCTCCAGACAAGGAATCTCCGAGCACACGATCAAGCTCCCCGGCCGGTGGTCTTCCCAAGCTTATAACCTATACATCCGTTCCCAACCAGACGGTTTGAGACAGGCTCATTCCAAACTAGCTTCCACACAAGCTCCAAttttggggatataactgcacgcttcttcaagcacgcagttcagaactccagcccaaatttccctgagttccctcccctttttccttcttctttctctacctctttaggcgtggtccgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190809 lncRNA upstream 29728 12348585 ~ 12349268 (+) True G140928
TU190810 lncRNA upstream 29728 12348585 ~ 12349268 (+) False G140928
TU190811 lncRNA upstream 29728 12348585 ~ 12349268 (+) False G140928
TU190844 lncRNA upstream 111362 12267168 ~ 12267634 (+) True G140944
TU190837 lncRNA upstream 137161 12241325 ~ 12241835 (+) True G140938
TU190855 lncRNA downstream 63176 12444730 ~ 12446783 (+) True G140955
TU190857 lncRNA downstream 86782 12468336 ~ 12469122 (+) True G140957
TU190971 lncRNA downstream 104726 12486280 ~ 12486571 (+) True G141046
TU191006 lncRNA downstream 227092 12608646 ~ 12609502 (+) True G141074
TU191007 lncRNA downstream 229744 12611298 ~ 12612090 (+) True G141075
XM_022678035.1 mRNA upstream 37417 12179687 ~ 12341579 (+) False LOC103027534
XM_022678033.1 mRNA upstream 206530 12132187 ~ 12172466 (+) True LOC103028579
XM_022678026.1 mRNA upstream 451248 11866450 ~ 11927748 (+) False LOC103028056
XM_022678038.1 mRNA downstream 326556 12708110 ~ 12732368 (+) True LOC103030385
XM_007235293.3 mRNA downstream 461244 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA downstream 461246 12842800 ~ 12847180 (+) False LOC103029537
XM_022678039.1 mRNA downstream 1011823 13393377 ~ 13437203 (+) True LOC103030306
XM_007260179.2 mRNA downstream 1414840 13796394 ~ 13846951 (+) False rgs20
TU190829 other upstream 138371 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 922986 11455485 ~ 11456010 (+) True LOC111194237
LOC111194307 other upstream 926390 11451935 ~ 11452606 (+) True LOC111194307
LOC111194236 other upstream 928053 11450374 ~ 11450943 (+) True LOC111194236
LOC103030487 other upstream 940043 11438421 ~ 11438953 (+) True LOC103030487
TU191019 other downstream 359919 12741473 ~ 12743453 (+) True G141086
TU191033 other downstream 461260 12842814 ~ 12849942 (+) False LOC103029537
TU191361 other downstream 1474049 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 1799111 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 2146586 14528140 ~ 14530296 (+) True G141495

Expression Profile