RNA id: TU190837


Basic Information

Item Value
RNA id TU190837
length 382
lncRNA type intronic
GC content 0.41
exon number 2
gene id G140938
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12241325 ~ 12241835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATGCTGAGGGTTAGGTGTTggattaggttttagggttgagatTATGCtgagggttaggtgtaggattaggttttagggttgagatTATGCtgagggttaggtgtaggattaggttttagaGTTGAGATTATGCtgagggttagGTGTTggattaggttttagggttgagatTATGCTGAAGGTTAAGtgtaggattaggttttagggttgagatTATGCtgagggttaggtgtaggattaggttttagggttgagatTATGCTGAGGGTTAGGTGTTggattaggttttagggttgagatTATGCTgagggttaggtttaggattaggttttagggtttagATTATGCtgagggttaggtgtaggattaggttttagggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190767 lncRNA upstream 187170 12053916 ~ 12054155 (+) True G140896
TU190708 lncRNA upstream 268796 11971104 ~ 11972529 (+) True G140843
TU190693 lncRNA upstream 310492 11929641 ~ 11930833 (+) True G140829
TU190694 lncRNA upstream 350654 11875270 ~ 11890671 (+) True G140830
TU190648 lncRNA upstream 399427 11837173 ~ 11841898 (+) True G140796
TU190844 lncRNA downstream 25333 12267168 ~ 12267634 (+) True G140944
TU190809 lncRNA downstream 106750 12348585 ~ 12349268 (+) True G140928
TU190810 lncRNA downstream 106750 12348585 ~ 12349268 (+) False G140928
TU190811 lncRNA downstream 106750 12348585 ~ 12349268 (+) False G140928
TU190824 lncRNA downstream 137161 12378996 ~ 12381554 (+) False G140930
XM_022678033.1 mRNA upstream 68859 12132187 ~ 12172466 (+) True LOC103028579
XM_022678028.1 mRNA upstream 313577 11866450 ~ 11927748 (+) True LOC103028056
XM_022678026.1 mRNA upstream 313577 11866450 ~ 11927748 (+) False LOC103028056
XM_022678029.1 mRNA upstream 313577 11866451 ~ 11927748 (+) False LOC103028056
XM_022678027.1 mRNA upstream 313577 11868961 ~ 11927748 (+) False LOC103028056
XM_022678036.1 mRNA downstream 7110 12248945 ~ 12464647 (+) False LOC103027534
XM_022678038.1 mRNA downstream 466275 12708110 ~ 12732368 (+) True LOC103030385
XM_007235293.3 mRNA downstream 600963 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA downstream 600965 12842800 ~ 12847180 (+) False LOC103029537
XM_022678039.1 mRNA downstream 1151542 13393377 ~ 13437203 (+) True LOC103030306
TU190829 other upstream 700 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 785315 11455485 ~ 11456010 (+) True LOC111194237
LOC111194307 other upstream 788719 11451935 ~ 11452606 (+) True LOC111194307
LOC111194236 other upstream 790382 11450374 ~ 11450943 (+) True LOC111194236
LOC103030487 other upstream 802372 11438421 ~ 11438953 (+) True LOC103030487
TU190827 other downstream 137161 12378996 ~ 12381554 (+) True G140930
TU191019 other downstream 499638 12741473 ~ 12743453 (+) True G141086
TU191033 other downstream 600979 12842814 ~ 12849942 (+) False LOC103029537
TU191361 other downstream 1613768 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 1938830 14180665 ~ 14200998 (+) True G141410

Expression Profile