RNA id: TU191035


Basic Information

Item Value
RNA id TU191035
length 4141
lncRNA type sense_over
GC content 0.40
exon number 5
gene id LOC103029537
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12842798 ~ 12860327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGGGGCTGGCTAAACCTCCTTATCCCACCTGATTTAGGAGGATAGCTTATGAATACAAATTACTAACCAATCGCAGCCCAGGAGCCGAGTCGCCAGTAACCAGTTACAGCATAGGAGGCGGAACGAAACCAGCCAATCCCGGCGCTGGGGGGCGTGGCTCTTCGGAAAGCGGGTGTAAAAAAGAAACCCGTTGGGAGCTCATTTACTAGTTTTTTATGTTGTAGTTTTTAACTGTAGCTCACCAAAAAATCAGCGGGAATTCGTGATATGGATTCAGTCTGGCTTTCAAGTGGGATTGGGAAATGGGTCGTATTAACCAATTgctgagggaaaaaaagaaaaacaggaagaagaaaaaaaaatcatgcggAAAATTCCTCAACATTATAAACAGGAGATCTGCAGTGATTTTGCTTGATCTCATCTAGGATTATTTTATGTCACGTTTTTacgttttttaaataaacaacgAAAACGAAACGATTAAAAACAGGATGATGGTTAAACGAAAACAACTCAAATTTCTTatggaaaatgaaaagaaaatagACTAGAAAGCGACGTGTTCGATGAGGATGGGAACTCTCTGGGGGATCTCGCCTTTGACTCAGAGCCGTTGTCCATCCGCAGTTCTCCGCCCCTCTCGGACGACATGTACACACTGTACTACCCGCCAGAAAAGAGAGCGGAAAGGCATGCAGATGCAGATGGATTATTAGATAGAGCCTTGAGGGACATCCTGGTTCAGTTATCAGCACGAAAATATCTGCATTCTCTGATGGCAGTGCGTGTAGGtgatgaggatgaagaagaaCCATTATCCAAGCGTCACTCTGACGGGATCTTCACGGACAGCTACAGCCGCTATCGAAAGCAAATGGCCGTCAAGAAATATCTGGCCGCAGTTCTGGGCAGAAGGTACAGACAAAGATTTAGAAACAAAGGACGCCGGTTTGCTTATTTGTAGCGTCCATAGAGGAAAAAAATCCCCTCCTCCTTCAAAAAAAACTTGCCCcccaactaccaccaccaccactacctgCCCACCCACCCTTATGTACATTGAAGCCCAAAGCCACTCCAACAACATAGCCGACTAAATCCAGTGCATCCAGTGCGCCTGTGTTTCTTTAAACATGTACTTATGTATGAAGTAAAGccattaaatgattattttactaagaacattgtttttttttcttttttgtacaacgaaaaaaaaagcacttgaGACCGCACAGTTATACtctgatttatttatcatttctttctttcttttttttttgttggtggatTAATCGTTTTAGTTTTATGTATATAGCTTTATATgttgaaaacatacaaaaaaagaacaaaaagtaggaaaaaaagcattatatatatatatctctatatctatATGACAATTGTGCACCTTGAACATTATGCGCTTGATATCTTTTTTCGAATTCATCAtatgcagaaaaataaatagattttaaaaagaCAATCAAAGTTCTGAATGTTATACTTATTTTTGTAAtcaaaagaggagagaaaaaaaatacaaaacaaacgaAAAGAAAAGTGAGTTTTATTTTGTCCAATGTTGGCCTAGGGATGTAGTCAATATAGACTTACTACTCTGTAAAAGCACAGGCTGTAGTGGTCAGGATGTAGGGGAGGGTGAGGGAGGGGTAAggatgggggtggggggtgggcactggagtgcatttatttatgtagacCTATGGAGTCACCTGTCTGACCGGAGTGGCCGAGAGACAAGAAACCATACATCCCACAGGAAGGTCTCAATGTCCATGGTGTGCATTGATTCCTTAAGTGGCATGCTCtcgagaagaaaaaaaaaatctgtacaatCTTAAAAATTAAAGGTGCTACAGATTGTTCTTTGAGGGATGCCATTGAAAAACCCTGAAGGAGCGTTTTCTGCAAATGTGAGATTGGAAACTCCACATCGAGAGAAAGCTCCTTGATGAttgaaaaaaggtaaaaggtgGAGGCAAGCTTCTTTTATGGAATCGCTCACCCTATGAAAGAACCCTTTGCAGCACCTTTTAACGTTTTTAAGACTGTAGACGACTGTAAACTTCACCTCACCTCCGTTCTTATGCATGCTATACATAGTGTATACATGCATGTGCAGTCcaccactgtgtgtgtttcatgtcATGCAGGTTCTTGTGTTCTTTTCCCGTGgtcttcgttttttttctgACCGAGACCCCCTCCATTCCATTGGTTAGGCTTGCATCATCTATTTATCTTCTTAAGAGTATTCAACAATCTATTGCACATAGGTTGCCAAATAGAAGATAACCTtctttttgcacaaaaaaagggGTATACGAACCTGTCTCAAGTGCATGTTGTGCTTTTTTTCTGATGTGTTGTTATCCTAGCATGTCATCCAATGGGTTCTAGGCATGTTCTGAGTGACTGTATTCATGGTTtcgcttcattttttttctctcttgtccTGCTCTGAATTGGTTTTTGGTTTCGTTTTGTTTCCCCCCTGCCCTGAGAACTGTGTTAATGTAgaagttgtgttgtgttgaaaaaaagaaaaaacagcaacaaaaaatacAGCTAGAAAATACGAACTTGTCGATAGTTGGCAATTGATTCTGAGCTGGAGATGAGGAGAAAAGTCTAAAGGGAGTTCAGTTCAACTTCCAGTCATCACTCTGTTCTTCATGAATGTCCAAATGTTGGACTTATAGATTCCAAAGCAGTATTGCTCCAGAGACTTACTTGCTTGCTTGCGTAGGTTGATTCCAGTGAAGTTTGGCTAGAGTTTGTTTTTCCATGACCCATTTTCCATACCACGTCATTAGGCTACATACGAAATGAAATTGTTTGTGTTAACGTGCATCTCTTTaaagaaagtgaaaaaagagaaagagagagagagagagattgtgcgAGAGGGAGTGAAgtcctgagagaaagagaagattGGGGAAGATTGGGGAGCCAGAGTATCCAGGGGGAAAAGCCAGGTTCATGTTGCCACTTATTGTGGCGTTCTTTAATCAGTTTTGCCCTTTTGTAGATTCAAGTCAGAGATAAGTATCAAAGTATTATGCAGCATTTAGACTAGAGCTATATGACCAATACGACCTAAGGCAATCTGTCTCcaaatttgttgttttttccccTTATACCTCATACTGTCCATAAACTGCTGTTGGCGGTTTGCGTACAGTATATTCCATAAAACGGAAATCAGGCCTTATTTGCCCACTGATTCAATCTCTAAGCCCGGCGTTCCAGGCAAGAAATCAATCTTCCTTCAATTTGGCATCATTCCCCCAGGCTTTATATGAGTGTGGATGTTtctatgggtgtgtgtgtgtgtgtgcgtatgtgtgggTGCGAGTGCACAAGCATGACAGCAGTGTGTGACAGACAGCACAGCTTTCAGCTTCGGTGCCTTGCTACAacgtatgacaaaaaaaaaagaaaattcgcCACTTGATACGGATGGCAATTTTTAGTGGCCCTACAATGCTGCAGACTATTAGCTTACATTTCACTATCCATTCTTTTCCTTcttatttcttctttcttttatttccttttttttttcaaattcggTCGGATCAATATCCCGACGACAGCCGAAAAGCATGGCCAACAATCTATTGTGATCCAATTCCCTATTGAACTGGTGTAAATGGCACAAAGTATTACCTGTCTCAGAGTATATAGGCTGTCCTGAGTTTTAACGACTGAttgactgaatgaatgaatgaatgttctTGTGGCAAGCAAAGTTTGTTTCTGTCTCACCTTATTCTCAGAAACCGACCCATATACAGACATATAtcgatatacatatatatactgacataaatacatatatttatatgtagagGCCCTCAAAGCCGAGCTTGTtcctttatcttttttctttccttttattttttgtgttgttttcttcTTGCATTGCTCGAAGGTTATTTGACAGCTAGCCTGATGGAAAAGCCTGATGGAGCCCAGTCCACAGCCCAGCCTGTTGTGTACATTTCTGAGAGCGCCAAAAGCCTTAATGTGAAAGTTTTCTCTATATCTGAATTATCATGTGTGAACTAAGTGAAATATTAGCGAAACGTGAAAAGGAATTCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191040 lncRNA upstream 27946 12814867 ~ 12816236 (+) True G141099
TU191023 lncRNA upstream 58445 12738242 ~ 12785737 (+) True G141087
TU191007 lncRNA upstream 232092 12611298 ~ 12612090 (+) True G141075
TU191006 lncRNA upstream 234680 12608646 ~ 12609502 (+) True G141074
TU190971 lncRNA upstream 357611 12486280 ~ 12486571 (+) True G141046
TU191132 lncRNA downstream 124540 12984867 ~ 12990434 (+) True G141178
TU191141 lncRNA downstream 170445 13030772 ~ 13033593 (+) True G141185
TU191144 lncRNA downstream 172805 13033132 ~ 13033593 (+) False G141185
TU191148 lncRNA downstream 180463 13040790 ~ 13041271 (+) True G141188
TU191149 lncRNA downstream 238759 13099086 ~ 13115018 (+) True G141189
XM_022678038.1 mRNA upstream 111814 12708110 ~ 12732368 (+) True LOC103030385
XM_022678034.1 mRNA upstream 379535 12179700 ~ 12464647 (+) True LOC103027534
XM_022678036.1 mRNA upstream 379535 12248945 ~ 12464647 (+) False LOC103027534
XM_022678035.1 mRNA upstream 502603 12179687 ~ 12341579 (+) False LOC103027534
XM_022678033.1 mRNA upstream 671716 12132187 ~ 12172466 (+) True LOC103028579
XM_022678039.1 mRNA downstream 533050 13393377 ~ 13437203 (+) True LOC103030306
XM_007260179.2 mRNA downstream 936067 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA downstream 936067 13796394 ~ 13846951 (+) False rgs20
XM_007260181.3 mRNA downstream 961297 13821624 ~ 13846951 (+) False rgs20
XM_022678040.1 mRNA downstream 980412 13840739 ~ 13846951 (+) True rgs20
TU191019 other upstream 100729 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 462628 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 603557 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 1388172 11455485 ~ 11456010 (+) True LOC111194237
LOC111194307 other upstream 1391576 11451935 ~ 11452606 (+) True LOC111194307
TU191361 other downstream 995276 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 1320338 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 1667813 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 2194330 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 2368383 15228710 ~ 15285457 (+) True G141791

Expression Profile