RNA id: TU191141


Basic Information

Item Value
RNA id TU191141
length 452
lncRNA type inter_gene
GC content 0.64
exon number 4
gene id G141185
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13030772 ~ 13033593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacccagctccgaAATTCTCTCGCCGGCTACGCCCATCTCCGAggtgtcttcggctgctgagccacgcccccggactcctgccgtgtctgcagaagctgcacaagcctccgtgtcgtctgcagaagctgcacaagcctccgtgtcgtctgcagaagctgctcaagcctccgtgtctgcagaagctgctccagtctccgtctcctgtccagttccccgtccagtctccgtctcctgtccagttccccgtccagtctccgtctcctgtccagttccccgtccagtctccgtctcctgtccagttccccgtccagtctccgtctcctgtccagttccccgtccagtctccgtctcctgtccagttccccgtccagtctccgtctcctgtcctgtctccgtttcagtccccggtctcgactcctgttttccccggcctctccctgccgccagcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191132 lncRNA upstream 40338 12984867 ~ 12990434 (+) True G141178
TU191035 lncRNA upstream 170445 12844182 ~ 12860327 (+) True LOC103029537
TU191040 lncRNA upstream 214536 12814867 ~ 12816236 (+) True G141099
TU191023 lncRNA upstream 245035 12738242 ~ 12785737 (+) True G141087
TU191007 lncRNA upstream 418682 12611298 ~ 12612090 (+) True G141075
TU191148 lncRNA downstream 7197 13040790 ~ 13041271 (+) True G141188
TU191149 lncRNA downstream 65493 13099086 ~ 13115018 (+) True G141189
TU191156 lncRNA downstream 103173 13136766 ~ 13212354 (+) True G141195
TU191161 lncRNA downstream 171301 13204894 ~ 13205263 (+) True G141200
TU191185 lncRNA downstream 300334 13333927 ~ 13334392 (+) True G141221
XM_007235293.3 mRNA upstream 183592 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA upstream 183592 12842800 ~ 12847180 (+) False LOC103029537
XM_022678038.1 mRNA upstream 298404 12708110 ~ 12732368 (+) True LOC103030385
XM_022678034.1 mRNA upstream 566125 12179700 ~ 12464647 (+) True LOC103027534
XM_022678039.1 mRNA downstream 359784 13393377 ~ 13437203 (+) True LOC103030306
XM_007260179.2 mRNA downstream 762801 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA downstream 762801 13796394 ~ 13846951 (+) False rgs20
XM_007260181.3 mRNA downstream 788031 13821624 ~ 13846951 (+) False rgs20
XM_022678040.1 mRNA downstream 807146 13840739 ~ 13846951 (+) True rgs20
TU191033 other upstream 180830 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 287319 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 649218 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 790147 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 1574762 11455485 ~ 11456010 (+) True LOC111194237
TU191361 other downstream 822010 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 1147072 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 1494547 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 2021064 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 2195117 15228710 ~ 15285457 (+) True G141791

Expression Profile