RNA id: TU191156


Basic Information

Item Value
RNA id TU191156
length 306
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G141195
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13136766 ~ 13212354 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccgattccagatcgattccagtgtgtttacttaaataacgaatgctcttatcagtctagagtaaaatatggtgtccctcaaggatcaatactgggtccattactctttactcttcatatgctaccactgggtaaaattatccgtaggcatggtattaactttcactgctatgctgatgacacgcaactttacatatctgctaaacccaacgaggagctctgtacaaatcaaataacagactgtattaaagacattaaaaattggatgacacacaactttctcttacttaattctgataaaactgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191149 lncRNA upstream 21748 13099086 ~ 13115018 (+) True G141189
TU191148 lncRNA upstream 95495 13040790 ~ 13041271 (+) True G141188
TU191141 lncRNA upstream 103173 13030772 ~ 13033593 (+) True G141185
TU191144 lncRNA upstream 103173 13033132 ~ 13033593 (+) False G141185
TU191132 lncRNA upstream 146332 12984867 ~ 12990434 (+) True G141178
TU191185 lncRNA downstream 121573 13333927 ~ 13334392 (+) True G141221
TU191193 lncRNA downstream 163401 13375755 ~ 13441640 (+) True G141224
TU191254 lncRNA downstream 334040 13546394 ~ 13547636 (+) True G141275
TU191265 lncRNA downstream 373474 13585828 ~ 13586433 (+) True G141285
TU191273 lncRNA downstream 374998 13587352 ~ 13587825 (+) True G141291
XM_007235293.3 mRNA upstream 289586 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA upstream 289586 12842800 ~ 12847180 (+) False LOC103029537
XM_022678038.1 mRNA upstream 404398 12708110 ~ 12732368 (+) True LOC103030385
XM_022678034.1 mRNA upstream 672119 12179700 ~ 12464647 (+) True LOC103027534
XM_022678039.1 mRNA downstream 181023 13393377 ~ 13437203 (+) True LOC103030306
XM_007260179.2 mRNA downstream 584040 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA downstream 584040 13796394 ~ 13846951 (+) False rgs20
XM_007260181.3 mRNA downstream 609270 13821624 ~ 13846951 (+) False rgs20
XM_022678040.1 mRNA downstream 628385 13840739 ~ 13846951 (+) True rgs20
TU191033 other upstream 286824 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 393313 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 755212 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 896141 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 1680756 11455485 ~ 11456010 (+) True LOC111194237
TU191361 other downstream 643249 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 968311 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 1315786 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 1842303 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 2016356 15228710 ~ 15285457 (+) True G141791

Expression Profile