RNA id: TU191265


Basic Information

Item Value
RNA id TU191265
length 606
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G141285
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13585828 ~ 13586433 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTTATTTAATGATAACGGTTTGTTAATTAACTATACAGAATTCCTAGCAACCTATGAAATATCAGTGACACCCAAGAACTTCTCTATTCCTATGGATGAAATCCCCTCTGGGGTATTAATAATGGTCTGAGGTGAAATCAAGATACCACCTacttttacacctgtagttaaCCCAATAAAGACTTCAATTGGCAAGACATGCTTCTCCTCTGAATTTaacaataatgttttattttagaaaacatTGTCTCAGTTCCTCATGTTATATACTGGAACCAATATGGTTGGACCaactttatctttgattgcagcacacattcactgtggcattgtttcaataatcttctgcaatgtcacaagatttttttttttcaatccagtgttgcattaattttacaCCAAGTTCTTGCAGAAtcgatgatggtagagtctgaccactgcacaaagtcttctccatccagcacatcccaaagattctcaatgaggttaagatctggactctgtggtgaactctcaatccatgtgtgaaaatgatgatctcatgctccctgaaccactctttcacaattccagcaccatgaatcctggcattatcatattggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191254 lncRNA upstream 38192 13546394 ~ 13547636 (+) True G141275
TU191193 lncRNA upstream 144188 13375755 ~ 13441640 (+) True G141224
TU191185 lncRNA upstream 251436 13333927 ~ 13334392 (+) True G141221
TU191156 lncRNA upstream 373474 13136766 ~ 13212354 (+) True G141195
TU191161 lncRNA upstream 380565 13204894 ~ 13205263 (+) True G141200
TU191273 lncRNA downstream 919 13587352 ~ 13587825 (+) True G141291
TU191274 lncRNA downstream 1657 13588090 ~ 13588459 (+) True G141292
TU191295 lncRNA downstream 61428 13647861 ~ 13648072 (+) True G141311
TU191313 lncRNA downstream 172250 13758683 ~ 13791358 (+) True G141323
TU191316 lncRNA downstream 206583 13793016 ~ 13849982 (+) True G141324
XM_022678039.1 mRNA upstream 148625 13393377 ~ 13437203 (+) True LOC103030306
XM_007235293.3 mRNA upstream 738648 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA upstream 738648 12842800 ~ 12847180 (+) False LOC103029537
XM_022678038.1 mRNA upstream 853460 12708110 ~ 12732368 (+) True LOC103030385
XM_022678036.1 mRNA upstream 1121181 12248945 ~ 12464647 (+) False LOC103027534
XM_007260179.2 mRNA downstream 209961 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA downstream 209961 13796394 ~ 13846951 (+) False rgs20
XM_007260181.3 mRNA downstream 235191 13821624 ~ 13846951 (+) False rgs20
XM_022678040.1 mRNA downstream 254306 13840739 ~ 13846951 (+) True rgs20
XM_022678041.1 mRNA downstream 279854 13866287 ~ 13882845 (+) True LOC103040707
TU191033 other upstream 735886 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 842375 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1204274 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1345203 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 2129818 11455485 ~ 11456010 (+) True LOC111194237
TU191361 other downstream 269170 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 594232 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 941707 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 1468224 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1642277 15228710 ~ 15285457 (+) True G141791

Expression Profile