RNA id: TU191273


Basic Information

Item Value
RNA id TU191273
length 474
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G141291
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13587352 ~ 13587825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATTTTATTTCCACAGCAAAATACTGCACATAAACACTTGATTCCATAATGAGGGGAGAATAACATCTGATGTTACGTAGTTCAGATTCAAGCCCTGTTTTTAAGGACTTCGTCAGCACATTACAAGCTAAGAACactcccacccacacacacacacacacacactttaaacatgTTGAGATTTAAGCCTGTTATACAACCACAGCAGACAGTATTGTCCAGCTGTACTCATAAATATAATAGAGCAGAGGTAATAATaactgtgttgttttgtgttgtatGGTTTTGGATTGTGAGTGTGATGAATGTGTGCAAAAGTGTACATGTAAATGGGATTTTAAATGGACCAGCAAAATGTAGGATTATGGGTCAGTTTTCCCAGactgggattaagcctagtcatcaaaatgctttttttccccaagactaggcttaatccctgtctgggaaactgtccttaaaggagaactccgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191265 lncRNA upstream 919 13585828 ~ 13586433 (+) True G141285
TU191254 lncRNA upstream 39716 13546394 ~ 13547636 (+) True G141275
TU191193 lncRNA upstream 145712 13375755 ~ 13441640 (+) True G141224
TU191185 lncRNA upstream 252960 13333927 ~ 13334392 (+) True G141221
TU191156 lncRNA upstream 374998 13136766 ~ 13212354 (+) True G141195
TU191274 lncRNA downstream 265 13588090 ~ 13588459 (+) True G141292
TU191295 lncRNA downstream 60036 13647861 ~ 13648072 (+) True G141311
TU191313 lncRNA downstream 170858 13758683 ~ 13791358 (+) True G141323
TU191316 lncRNA downstream 205191 13793016 ~ 13849982 (+) True G141324
TU191323 lncRNA downstream 238878 13826703 ~ 13831030 (+) True G141329
XM_022678039.1 mRNA upstream 150149 13393377 ~ 13437203 (+) True LOC103030306
XM_007235293.3 mRNA upstream 740172 12842798 ~ 12847180 (+) False LOC103029537
XM_007235294.3 mRNA upstream 740172 12842800 ~ 12847180 (+) False LOC103029537
XM_022678038.1 mRNA upstream 854984 12708110 ~ 12732368 (+) True LOC103030385
XM_022678036.1 mRNA upstream 1122705 12248945 ~ 12464647 (+) False LOC103027534
XM_007260179.2 mRNA downstream 208569 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA downstream 208569 13796394 ~ 13846951 (+) False rgs20
XM_007260181.3 mRNA downstream 233799 13821624 ~ 13846951 (+) False rgs20
XM_022678040.1 mRNA downstream 252914 13840739 ~ 13846951 (+) True rgs20
XM_022678041.1 mRNA downstream 278462 13866287 ~ 13882845 (+) True LOC103040707
TU191033 other upstream 737410 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 843899 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1205798 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1346727 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 2131342 11455485 ~ 11456010 (+) True LOC111194237
TU191361 other downstream 267778 13855603 ~ 13858605 (+) True G141361
TU191433 other downstream 592840 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 940315 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 1466832 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1640885 15228710 ~ 15285457 (+) True G141791

Expression Profile