RNA id: TU191361


Basic Information

Item Value
RNA id TU191361
length 1047
RNA type TUCP
GC content 0.40
exon number 5
gene id G141361
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13855603 ~ 13858605 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaacagtAGAAATTTGCCAATCATGCATACAAATTGAATACATTGGGAGAAGGGTCATGTTTCTAACATGGTTCAAAATGTGTCagactaaaataaaactaacacagagttaacaataaaaacaaataaaagctaCAGCCTTATCCTTTTCCATCGATTTGGTAAAACAGCCTAGGAAATTTAAATAGCATAATTGTGTCTAATTTCTGTTAGGGCAAACGAAAACCGCCTACATGTGAATgtcgtcaaaaaaaaaaaaaaaaaaagctcaactACATATAAAAAGAGATgataaaagaaacaatgaaacaacGACACCGATCTTAGTCCAAAGGCTGAGCCTAGCTATACGTCAAGTTAAAACACAGGACATGAGTTGAAGGACCAAAacaatcaaataataaaaacattgatgtCTACTGTGGCCGTTGTACACCAGAGGCCACAGACTTAAAAGTTCCTATTGGTTGATGATACAGAAACATGGTCCATGAATTTAGCTACCTCTCTGTGTGCGGACAGTTCTTCCCTGCCTTCAGCAGAACTTCCACCTATTGCCGCATTCATTACAGAAGACAAACGTGGTCATCGGCTCATCAGCACTTCGAGTCTGAACCTGTGTGTAGGTGCATCTATTCTTTTTGCATTTCCCACAGGTAAACAGGTCAGTCACGGTGCCTCCAGTCTTGGCCATTTGGTGGTCCCTGATAGCCTCTTTGGTCAGATTCTTCCTCATCTCCTTCAGTTCATCGCTGGCCATTTCCTCTGCTGTCATTTTGGCTATGCGGGTTGGAGGCACGTTGCCACATAGTACATTCCTCCTAAGGTTGGGGTTCTTGGCATCCTTAAGATTTGCGATTCGGCTTCTTATACGGTTCTTGTATTTCATGTCGGTGTTTTTGAACTCCATGAAGACACATTCCTCAATCTGTGCACCAAGTTCATCACAGTCAGCCCCAATTGTGATGTGATCATCTAGCCAGGAAGAAAAGATACAGAGAAACATTATTTCACATGAACTCCGATTAATGACCAACAGTTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191316 lncRNA upstream 5621 13793016 ~ 13849982 (+) True G141324
TU191323 lncRNA upstream 24573 13826703 ~ 13831030 (+) True G141329
TU191313 lncRNA upstream 64245 13758683 ~ 13791358 (+) True G141323
TU191295 lncRNA upstream 207531 13647861 ~ 13648072 (+) True G141311
TU191274 lncRNA upstream 267144 13588090 ~ 13588459 (+) True G141292
TU191428 lncRNA downstream 310109 14168714 ~ 14170792 (+) True G141405
TU191429 lncRNA downstream 313621 14172226 ~ 14173432 (+) True G141406
TU191437 lncRNA downstream 323439 14182044 ~ 14193703 (+) False LOC111194315
XR_002651024.1 lncRNA downstream 323856 14182461 ~ 14193663 (+) False LOC111194315
TU191441 lncRNA downstream 326602 14185207 ~ 14191053 (+) True G141413
XM_007260179.2 mRNA upstream 8652 13796394 ~ 13846951 (+) False rgs20
XM_007260180.2 mRNA upstream 8652 13796394 ~ 13846951 (+) False rgs20
XM_007260181.3 mRNA upstream 8652 13821624 ~ 13846951 (+) False rgs20
XM_022678040.1 mRNA upstream 8652 13840739 ~ 13846951 (+) True rgs20
XM_022678039.1 mRNA upstream 418400 13393377 ~ 13437203 (+) True LOC103030306
XM_022678041.1 mRNA downstream 7682 13866287 ~ 13882845 (+) True LOC103040707
XM_022678043.1 mRNA downstream 42303 13900908 ~ 13918612 (+) True gpr141
XM_007260184.3 mRNA downstream 44635 13903240 ~ 13918612 (+) False gpr141
XM_007260188.3 mRNA downstream 79680 13938285 ~ 14142611 (+) True LOC103035806
XM_022678044.1 mRNA downstream 357505 14216110 ~ 14219347 (+) True LOC111194316
TU191033 other upstream 1005661 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1112150 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1474049 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1614978 12237988 ~ 12240625 (+) True G140931
LOC111194237 other upstream 2399593 11455485 ~ 11456010 (+) True LOC111194237
TU191433 other downstream 322060 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 669535 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 1196052 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1370105 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 1527011 15385616 ~ 15390415 (+) True G141754

Expression Profile