RNA id: TU191429


Basic Information

Item Value
RNA id TU191429
length 1086
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G141406
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14172226 ~ 14173432 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTAAACATTAATGAAGTGAAAACTCCTACGTTCCAGGATCACAACTGACTTTATTCACCAGACATTAATTTCCATTATCAATGTAGGACGGGGGTGAAATTCTGAAGACACAAAAACTCTAGCTGATTTTTAacctcagactgtggaagagtggAAGAGCTAAAATGAACAAGATGTTTCAGGAGACAGTCCTGCCCTTACCTTAAAGGAATGATGAAGTTATTAAGGAGATAAGGGAAGCATAGATAATTTTCTTGTCAGAGAGCTCATTTCATACTAATTTTAAACCCCTGGGTGACAACCGAGAACTCACTTGTCGTTCTTGATGTGCTCATAAAGGCGCTTGAATTGTCGGATTTGGAAAGAGAGTATTCCCATCAGAACCACGACCATCAGCAGGAAGGGGTAGATTCTCCTCTGAACCAGGTTCTGCATCTCCATTGTGACTCCTACGATTGGGACGATGCCTACAGCAATAACATAGGgcacacagagagacagcagCAGCACGGCGATGACTGGGGCCGCCAGCTTTCGGATGATGAAATGGAGGTCAATGTTGCGGATTCCATTGGCATACACCTGGAGTGCAAGAAAGTCATACTTTAGAAGCATTCTGTAAAAAGCTACACTCACCAAGCAATTCACTGAAAACATCTTATTTAATATATCCATACTAATGTATCCCTAATGATGTATTAGGAATAAACTAATATGGGTGAGACACCTCCCTCCCTTTGCCTTCAAACAGATTCAATAATATTTCTGTCTGACACCCACTGTGATTTTGTCTGGTAGATGGTTGGTTAGCAGGCCAATCTCAATGGGGAGATATCTGGCTTAAGACACTAATTATGGCACAGATGCTGCAAGATGTTGAAAACATTCAGGTTCATGTTGACATGGCTGCTTAATGCaatttattttgacttttaaaattcCTTCCTGTTACAATAAAGTTAAGTTTATTGCCAAAGATGCTCTATAGGATATATGCAGTTCTGGTGACTGGGAGGGCCATTGAATACTGGATTACGGTCACCCAAGGACGAACAAAGCAGCAACCATAGTAAAACAGCCTGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191428 lncRNA upstream 1434 14168714 ~ 14170792 (+) True G141405
TU191316 lncRNA upstream 322244 13793016 ~ 13849982 (+) True G141324
TU191323 lncRNA upstream 341196 13826703 ~ 13831030 (+) True G141329
TU191313 lncRNA upstream 380868 13758683 ~ 13791358 (+) True G141323
TU191295 lncRNA upstream 524154 13647861 ~ 13648072 (+) True G141311
TU191437 lncRNA downstream 8612 14182044 ~ 14193703 (+) False LOC111194315
XR_002651024.1 lncRNA downstream 9029 14182461 ~ 14193663 (+) False LOC111194315
TU191441 lncRNA downstream 11775 14185207 ~ 14191053 (+) True G141413
TU191434 lncRNA downstream 18996 14192428 ~ 14193703 (+) True LOC111194315
TU191438 lncRNA downstream 18996 14192428 ~ 14198647 (+) False LOC111194315
XM_007260188.3 mRNA upstream 29615 13938285 ~ 14142611 (+) True LOC103035806
XM_022678043.1 mRNA upstream 253614 13900908 ~ 13918612 (+) True gpr141
XM_007260184.3 mRNA upstream 253614 13903240 ~ 13918612 (+) False gpr141
XM_022678041.1 mRNA upstream 289381 13866287 ~ 13882845 (+) True LOC103040707
XM_022678040.1 mRNA upstream 325275 13840739 ~ 13846951 (+) True rgs20
XM_022678044.1 mRNA downstream 42678 14216110 ~ 14219347 (+) True LOC111194316
XM_022678045.1 mRNA downstream 83440 14256872 ~ 14269906 (+) False LOC103037989
XM_022678047.1 mRNA downstream 83440 14256872 ~ 14269906 (+) False LOC103037989
XM_022678046.1 mRNA downstream 83894 14257326 ~ 14269906 (+) False LOC103037989
XM_022678048.1 mRNA downstream 88432 14261864 ~ 14269906 (+) True LOC103037989
TU191361 other upstream 313621 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1322284 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1428773 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1790672 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1931601 12237988 ~ 12240625 (+) True G140931
TU191433 other downstream 7233 14180665 ~ 14200998 (+) True G141410
TU191577 other downstream 354708 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 881225 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1055278 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 1212184 15385616 ~ 15390415 (+) True G141754

Expression Profile