RNA id: XR_002651024.1


Basic Information

Item Value
RNA id XR_002651024.1
length 309
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id LOC111194315
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14182044 ~ 14198647 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacaaacAGAATGACATGCATGTAAACATTTGGACGTCCAGGTAAGTATTGATGATAATTTTACAatgttaatgtattattttctctgttctctttttcACAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTACCCCCAGGCTCCCCTGCCCCAGGACACCCCTTGGTCTCTACCCAGACCTTAAGGACCCGGGTGGCTCGCGCGCCGCCATTTCCACAGGATCCAGGTAAgtactgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191429 lncRNA upstream 9029 14172226 ~ 14173432 (+) True G141406
TU191428 lncRNA upstream 11669 14168714 ~ 14170792 (+) True G141405
TU191316 lncRNA upstream 332479 13793016 ~ 13849982 (+) True G141324
TU191323 lncRNA upstream 351431 13826703 ~ 13831030 (+) True G141329
TU191313 lncRNA upstream 391103 13758683 ~ 13791358 (+) True G141323
TU191444 lncRNA downstream 9326 14202989 ~ 14208816 (+) True G141415
TU191498 lncRNA downstream 16797 14210460 ~ 14214264 (+) True G141459
TU191513 lncRNA downstream 28900 14222563 ~ 14236652 (+) True G141467
TU191575 lncRNA downstream 247242 14440905 ~ 14442332 (+) True LOC111194202
XR_002650985.1 lncRNA downstream 248013 14441676 ~ 14442304 (+) False LOC111194202
XM_007260188.3 mRNA upstream 39850 13938285 ~ 14142611 (+) True LOC103035806
XM_022678043.1 mRNA upstream 263849 13900908 ~ 13918612 (+) True gpr141
XM_007260184.3 mRNA upstream 263849 13903240 ~ 13918612 (+) False gpr141
XM_022678041.1 mRNA upstream 299616 13866287 ~ 13882845 (+) True LOC103040707
XM_022678040.1 mRNA upstream 335510 13840739 ~ 13846951 (+) True rgs20
XM_022678044.1 mRNA downstream 22447 14216110 ~ 14219347 (+) True LOC111194316
XM_022678045.1 mRNA downstream 63209 14256872 ~ 14269906 (+) False LOC103037989
XM_022678047.1 mRNA downstream 63209 14256872 ~ 14269906 (+) False LOC103037989
XM_022678046.1 mRNA downstream 63663 14257326 ~ 14269906 (+) False LOC103037989
XM_022678048.1 mRNA downstream 68201 14261864 ~ 14269906 (+) True LOC103037989
TU191361 other upstream 323856 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1332519 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1439008 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 1800907 12378996 ~ 12381554 (+) True G140930
TU190829 other upstream 1941836 12237988 ~ 12240625 (+) True G140931
TU191577 other downstream 334477 14528140 ~ 14530296 (+) True G141495
TU191927 other downstream 860994 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 1035047 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 1191953 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 1220113 15413776 ~ 15413847 (+) True trnae-uuc_20

Expression Profile