RNA id: TU191577


Basic Information

Item Value
RNA id TU191577
length 679
RNA type TUCP
GC content 0.54
exon number 2
gene id G141495
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14528140 ~ 14530296 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAGATTATGTCCCAGATGATGCTGATGGCAAAGATGAATACGATGGTAAGATAATTATAATGATGGCGAAAATGATTACGACCATGGTGAGGAGGGTTATGATGGAAGCAGGGAGCATATGCGACCCACGCACTCTGTCCAGCTCAAAGGATAGACACCACGTTGGATAATTGTCTTCAATCCCGAAATGAGGTCAGCATTCAAAGGAACGCCAGTTCCAGGCCGCCAGCAAGCCGGCCCACGGCAGGGATATCACAGGCAGCTGGGGGTCTCCCGACATGCAGCCGTCTACACTGAAATTAGCAGCATGTGACCAGCAGGCGGCGCCAAATCAGCAGCAGGAATGTCACAGTGGCCATGCTCGAGTACCGCCCAGTGAGGCTGCAGGGAGGCGGAGCCACACCAAGCCAGCGGGTCAGGCGGAAAAGCATGTTGGAAGGGGAAACAGGAAAGGGCGGGCCACGGGAGCGGCGCGGGTGCCGGCAGCGGCAGTGGTAACGGCGTGGGCGCCggtagaggcagagagagaaagaagatgctgagagagagagagagagaggggcgctGAACTCATATGCAGGAATGTCACtgaactatgttttttttttttttttttttttgaagggaCAACTACACAcgctcaggagagagagagaggaggcgtgGCTATGCTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650986.1 lncRNA upstream 9696 14517346 ~ 14518444 (+) True LOC111194203
TU191588 lncRNA upstream 41523 14485020 ~ 14486617 (+) True G141501
TU191590 lncRNA upstream 41523 14485020 ~ 14486617 (+) False G141501
TU191575 lncRNA upstream 85808 14440905 ~ 14442332 (+) True LOC111194202
XR_002650985.1 lncRNA upstream 85836 14441676 ~ 14442304 (+) False LOC111194202
TU191613 lncRNA downstream 15501 14545797 ~ 14547039 (+) True G141514
TU191615 lncRNA downstream 22337 14552633 ~ 14553089 (+) True G141516
TU191625 lncRNA downstream 35088 14565384 ~ 14567961 (+) True G141525
TU191650 lncRNA downstream 112184 14642480 ~ 14642690 (+) True G141548
TU191638 lncRNA downstream 253775 14784071 ~ 14784812 (+) False b4gat1
XM_022677715.1 mRNA upstream 11066 14515470 ~ 14517074 (+) True LOC111194241
XM_022677714.1 mRNA upstream 15201 14511793 ~ 14512939 (+) True LOC111194240
XM_022677713.1 mRNA upstream 27950 14488431 ~ 14500190 (+) True LOC103041924
XM_022677712.1 mRNA upstream 39719 14477554 ~ 14488421 (+) True LOC111194238
XM_007260197.3 mRNA upstream 55620 14461990 ~ 14472520 (+) True LOC103039460
XM_007238407.3 mRNA downstream 17812 14548108 ~ 14551573 (+) True trmt10b
XM_022678080.1 mRNA downstream 40073 14570369 ~ 14598691 (+) True intu
XM_022678079.1 mRNA downstream 42084 14572380 ~ 14598691 (+) False intu
XM_007238406.3 mRNA downstream 42085 14572381 ~ 14598691 (+) False intu
XM_007238403.3 mRNA downstream 70230 14600526 ~ 14617363 (+) False aadat
TU191433 other upstream 327142 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 669535 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 1678198 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 1784687 12741473 ~ 12743453 (+) True G141086
TU190827 other upstream 2146586 12378996 ~ 12381554 (+) True G140930
TU191927 other downstream 524361 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 698414 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 855320 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 883480 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 2418086 16948382 ~ 16967950 (+) True LOC103022185

Expression Profile