RNA id: TU191900


Basic Information

Item Value
RNA id TU191900
length 375
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G141724
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14963313 ~ 15000325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCAGGAGAAAaatacATTAAACTAAATGAGGGAAaggtggagggagagagaggaggtaaGATCTAATCAGGAAGGAGGGGGCACTGAGATTATTCTCTtcagagaaggaaaaaagaggACAGTTGAGggcgagaagagagagaagagagtagGGAAGACagtgaataaagagagagagaaaggaggagaggagaggagagaagtgTGTGCATTTATAAGTCGCTCTCTCCGTAGAGGGCACTGGAGAAGGAGATGTAGTCGAGAGCTCCTGGTGCTCCTTCTGGCCCGATGTACTTGGTCATGCGGCTGATGCAGTACTCGGCCTGCTCCGGGGGGAGCTCTCTGCGCAACTCGTCCACTGTGATGTAAGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191892 lncRNA upstream 101943 14856769 ~ 14861370 (+) False G141720
TU191890 lncRNA upstream 101943 14860484 ~ 14861370 (+) True G141720
TU191880 lncRNA upstream 133386 14827281 ~ 14829927 (+) True G141711
TU191645 lncRNA upstream 176939 14784950 ~ 14786374 (+) True G141543
TU191638 lncRNA upstream 178501 14784071 ~ 14784812 (+) False b4gat1
TU191934 lncRNA downstream 48298 15043773 ~ 15110749 (+) False G141746
TU191935 lncRNA downstream 48298 15043773 ~ 15116116 (+) True G141746
TU191941 lncRNA downstream 72288 15067763 ~ 15070509 (+) True G141750
TU191947 lncRNA downstream 84155 15079630 ~ 15081149 (+) True G141753
TU191957 lncRNA downstream 85061 15080536 ~ 15478957 (+) True G141755
XM_007238480.3 mRNA upstream 136250 14818945 ~ 14827063 (+) True LOC103038739
XM_007238479.3 mRNA upstream 145917 14812279 ~ 14817396 (+) True LOC103038426
XM_007238478.3 mRNA upstream 178638 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 191312 14759152 ~ 14772001 (+) True LOC103034986
XM_022678086.1 mRNA upstream 216618 14739009 ~ 14746695 (+) True LOC111194324
XM_007236091.3 mRNA downstream 326536 15322011 ~ 15366331 (+) True LOC103042634
XM_022677716.1 mRNA downstream 372043 15367518 ~ 15375404 (+) True LOC111194243
XM_007236093.2 mRNA downstream 380490 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 384203 15379678 ~ 15384906 (+) True LOC103043450
XM_007236094.3 mRNA downstream 384203 15379678 ~ 15384906 (+) False LOC103043450
TU191577 other upstream 433017 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 762315 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 1104708 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 2113371 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 2219860 12741473 ~ 12743453 (+) True G141086
TU191927 other downstream 59182 15054657 ~ 15056973 (+) True G141740
TU192022 other downstream 233235 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 390141 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 418301 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 1952907 16948382 ~ 16967950 (+) True LOC103022185

Expression Profile