RNA id: TU191935


Basic Information

Item Value
RNA id TU191935
length 2534
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G141746
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15043773 ~ 15116116 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCTTCCTCTGCTGCTTCTCCCAGGCGGGGTCCAGGAGCAGGTCCCGGTCCCAGTCATCCTCCTGGATCATGTATTCTTCCGCCGACATGGTGTACGTACTGTTGTACTGAGCCTGCGTCTCTACGGCCATCATCTTTCCGTCTCTTTTTTATCCCTTTTCACCACTTTTCTCAGGTAAAACAGACAAGGCTTTAGTTTGGTGACCTTTTAACCCTCCTGGGGGTCTCAGGGAGCGCGTGAGGGGGTCTTTtctgagcgtgtgtgtgtgtCCAAACTAAAACTGTACACTGAAACATGCAATAACTAAAGTATTAAACATTTAGAACTATACCAAACCAGTGTCTGTGTGCGGAAAGCAACACTGGCAGAaaccacatccacattcaatgcaggcgGCACTTATCTCACAGGTCATGACAAACGTGAcaggacatgatactagttccttTCCCATGACCAGAATGGTCCTTCTATGGTAGGggtgtttaaactttttttttccagatggggccagcttggactgtgtgtctctccactcttcctccagactctgcttcctcgatttacaaatgaaatgtaaaatttactgatgatcagtaattttggtttggagagacatgccatctgctggtgttgatccactgtgttttagtccaacatcagtgcagtgttttcccgtaaaatcttacagcacttcatgcttccctctgctgacaacttttatggagatgtggatttcattttccaggagGTTTTTGGTgccctgcccacactgccaaaaggcTCCTTGTGCAAAGGGGTGAAAAGGGacactctgtctgtctgtaataTGATGTAGACCAGGggagtccaaactttttttgttgggggccagaaggagaaatatatttgaagtcacgagCCACACTCTGTAACAACACAAATagtgaaatataccactttaaataatacttttttcctgattatttcatttacacaccattttacttgactaactatctttatctttaacagtgttgtgtaaactaagatttttcaagttgatgtttaatttcatgatgtctcttaatataaaactccgtAATTACGGCAACgtttggactctttggcccagtttttctgcgctagaaatgcgcaccctctccgcttttagacttttttgcccagtttttctgcgctagaaatgcgcaccctctccgactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggacaactttcattctatttctaaaatactttgcgtagtttggacacccctgatgtaTACAGTATTATCATACAGAGAACATGTTTAGATGTACACACCTGTTCTAGCTATCAATCGTTTGAACAATCGGATGCACACTTTGACCAGCCTCTGCTGGCTTTTATTTCACCTGGAACATGCACCCTTTCCATCATTAGTAACAGTCATGATTTGATAGCTAATAATTAATGGTGGATGGGATAGTTCTGCAGAGTAATATATGATGTATTGTGACAGGGCAGAAGCAATCGATAATATTGGAAACAGCAGAGTTGTATGAAATAATTTGcttattgtataaaataaatgagaaatggcttctgTGATGTGCACAAGTGACTACATGATGTGCAGATTAAACAACTGGTTTTGAGAAAtcccaggaaagaaaaaaacaagagttacctctgttgcacaggatacatTATTCAGAGTTACCAGCGTCAGAAACgtcaagttaacagctccccatataagagctaaaataaataaacaaaataataacagtattctggtttgttttacacttttaagtttactactTGATTGCTTATGTAAtcttcatttacaatgtaggacacaaaaaagtgtttccaaatttttgactggtattgtgtACATAGCctattttttctgtatctatGCTATGTTACAGTATATACggtctgtgtgtgtaaaaacgAAAAAATACCAttgtaattgtgttttaatttatggtgTTTATGTAGTGATTATGTATGGATATCCTATAAATTTGTGAGAACACGTATTTATGAGTACTGTGACAGACTATTACAGAAGACTGCACACTGAATACTAACTAAATAATTAGTTATTGTCTGTATTAACACATCACTAgccaaataatgaataatatatgCAGAACTATACACAAGGGATGCATAAATGAAGTGCAACCTGCTTCTTAAAAATGGTGTTATAACACACGTATAACACACAGCGCTTCTTAAACAAataagtagtaataataatcacacctcttCCAATGTTTACACGgtttagttagttttagttttaaacagcagagatgtagcaATGATTTTAGATGCTGTCACACTTCACAAATACCTGCTCTCATtctgaaatactttgtattagGCTCTTTAACAAAGGCAGAAATATGGTGTGGCATAGTGTATACACCATATAGtgtatacattaattaattaattttatatttatttatttttaagtacatacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191898 lncRNA upstream 43448 14976392 ~ 15000325 (+) False G141724
TU191900 lncRNA upstream 48298 14963313 ~ 14995475 (+) False G141724
TU191896 lncRNA upstream 48298 14991018 ~ 14995475 (+) False G141724
TU191903 lncRNA upstream 48298 14991018 ~ 14995475 (+) False G141724
TU191906 lncRNA upstream 48298 14991018 ~ 14995475 (+) True G141724
TU191976 lncRNA downstream 9899 15126015 ~ 15177465 (+) True G141764
TU191981 lncRNA downstream 9899 15126015 ~ 15177465 (+) False G141764
TU191969 lncRNA downstream 9946 15126062 ~ 15177465 (+) False G141764
TU191974 lncRNA downstream 9946 15126062 ~ 15177465 (+) False G141764
TU191994 lncRNA downstream 38229 15154345 ~ 15209618 (+) True G141771
XM_007238480.3 mRNA upstream 216710 14818945 ~ 14827063 (+) True LOC103038739
XM_007238479.3 mRNA upstream 226377 14812279 ~ 14817396 (+) True LOC103038426
XM_007238478.3 mRNA upstream 259098 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 271772 14759152 ~ 14772001 (+) True LOC103034986
XM_022678086.1 mRNA upstream 297078 14739009 ~ 14746695 (+) True LOC111194324
XM_007236091.3 mRNA downstream 205895 15322011 ~ 15366331 (+) True LOC103042634
XM_022677716.1 mRNA downstream 251402 15367518 ~ 15375404 (+) True LOC111194243
XM_007236093.2 mRNA downstream 259849 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 263562 15379678 ~ 15384906 (+) True LOC103043450
XM_007236094.3 mRNA downstream 263562 15379678 ~ 15384906 (+) False LOC103043450
TU191577 other upstream 513477 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 842775 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 1185168 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 2193831 12842814 ~ 12849942 (+) False LOC103029537
TU191019 other upstream 2300320 12741473 ~ 12743453 (+) True G141086
TU192022 other downstream 112594 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 269500 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 297660 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 1832266 16948382 ~ 16967950 (+) True LOC103022185
TU192402 other downstream 1856086 16972202 ~ 16973930 (+) False G142067

Expression Profile