RNA id: TU191941


Basic Information

Item Value
RNA id TU191941
length 2674
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G141750
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15067763 ~ 15070509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATGTATACCAGGCAACAACATAACCAATCATCAAAAGGAATTCAATTATTAAAACTATTGATTTAATTATTGATGGAATGTCAGGGTTCTGCACAACAATCGTGCTCAACatgaaatattgttaaatatgaTATAACGCTCTTATTATGATAGGGAATGTTATGTGTATATGGTTCAACAGCCAAGCAATTACACTTATGTGATACAGCGTGTGACGCAATGACGCATTGTGTGCAGTCGAGTGGAGCATGTTCAAGAGGACGGCCATGCTTCTActctgtgtttataataaagaataaaaactgAGAGACTCCGCTTATTATTCGCCACATAGGTTAAGTCTGAGCAAAATAATTAGATCACTTTTACAGGTTATGGGCCCAGGGTTGAAGATTATCGAGCGTGAGTAGTTAGTTAAGCACAACGTATTACGCGGGAAAGAAAAGTTTGGAGCTGAAGAAAAAGCTAGCGAGCTTGTGGTGAAGATGGCTAGCCGAGCCACTGGAGTTCCAGCACCACACTGTTCGACGGGTCTGAGGAGAAATACGACCTGTGTTGAGGctaaccctgctttaacactggaaagcgacaaagcgacaggcgaccattcatttcctatggcagggcgcgatttgtcgccACGACGGCTTATTACGGCGTCAAGAGACACACtaaaacgccgctttttacgccgtcTCATTGCACTGAGACGGCCTTCTGTACGGCGCACCAAAAGGGTCGAAAAACGCCGTGGGAAACGGCGTCTTCTGTGCTTTTAGCGGCGTTTTTAACGCCGtcgtgaaatcatacggcgtatattacggcgtcttgaaatcatacagcgtatattacggcgtaaaacccacacagaacggcgtatattacggcgtaaaacccacacagaacgtattttacgccgttcttttcgataaaaggcgtctggtccagccgttttttgggccttttggcgTTTCAGAacagagcgacaagcgacacggagatgaatttttctcaactttatgtaAATGAGTTATGACATGGTGAAGtgacattctaacccgattggctcctggcttttctttggaccaatcacaaacaaggcggttcgacgtcctcaagctcctgctctcctgaatttctagtttctttcccggttctttctgttgaacggggtggacccacatcagtctgtgggaacggctgcgtttccagcgcagttaaatcacagaaacgcacaagagtccagcaagtttgggagttatagctggagaataaagtggccaagtgatgccttttttcttgtcggaggctggaccatgataaacgcgggcgatgagcttgacacgcccacaagcgacaaacgctgggcgacacaagcgactcgtcaCGTTCCAGTATGAACGCAGAGTAAGGCTGGTAAGGCTAATCGATGACAAGAGACTTTCGCTAATCTGACATGAGGCTGCTGAAGATGGCAGAAAAGCACTGAAGATACTGCGAGAACATTACGCTGGTAAAACCTTAAAACATTAATCGCAGATCTGTTTCATTTTTGCCCAATCTAAACACAATTTCTTAACTTAAGATCTTACAGGACATATTTTCCAAATGCATATGAACATATATTTTGGATACAGATTTAAATATCGCATATTGGACAAtgtttttcacttttgacataatgtgaatctggcagttgttcttcaCATTGTGTCCATTTGTATTGATGAattaaccaatagaaatgctttgaAATGACtggtataaaatattttaacatcaaCATCAATTGCAAAGTAAAGATTTTCTCCTTCAGAGATACATAGGTTTTGTTAGAGTGACAATTTTCTATAgtatattgttaaatattatatgtatgttttacaCATAAATGTCTGTATATGCTGATATATGACTGAaattaatgtctatttttttgtaaatggtttatttcaaataattttgTCTTTTGTGTCACATATATTCCAATATGTATCACATTTAAATCTATATATGTCGATCAGATTTCTGTAAGGTTTGAGTTGATCCTGTTACAAACGAATATTTGAACAGCACACTTACCGTGTGTGTTATAGCTGTGTGTTCCTTCCTGAGGGGTATGAGAGTTTCAATAACCTCGTTTTAAACGCTTATAAGTGTTTGAATTAAAAGCAGCTCACATCTGAGTGAACAGAAAGCCCCTGCTGGTTTATAAGCAGAGCAGGATAATGCGCAGGGCACAAGGCAAGGTGGTAGTTTAAAAGGTTTCGTCAAGTCAGCAGGAATTTCTCTGAGCCCACATTCATAAAGCTACTCTGAGCAGAACTGCTGATCTAAGATTTAATTAGTGCTTTATTTAACATGACCTCACTGACAGGAACAAGACCTAGATCAAGAATTTTGCCCACACCACTACAGACCCCTTATTCTTCAGTCTGTCTTCATTCTtatgttctctctttctctgtaagtGCATTCTTTGTTTATGATTAATCACGACTGATTATATATGCTGTCATAAATTAGCTGCCGGTGGATCTGTGACTCTGCGACCTTTTCCTGCTATTGGTCGGTCTCTCTCCTCCCACAGCGTGACCCCGTCACACGCACAGATCTGTTTAGGGTTCTGAAAGAGTCCTGCAGAGCGAGCGATGATGCCACAAGCAAGCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191898 lncRNA upstream 67438 14976392 ~ 15000325 (+) False G141724
TU191900 lncRNA upstream 72288 14963313 ~ 14995475 (+) False G141724
TU191896 lncRNA upstream 72288 14991018 ~ 14995475 (+) False G141724
TU191903 lncRNA upstream 72288 14991018 ~ 14995475 (+) False G141724
TU191906 lncRNA upstream 72288 14991018 ~ 14995475 (+) True G141724
TU191947 lncRNA downstream 9121 15079630 ~ 15081149 (+) True G141753
TU191957 lncRNA downstream 10027 15080536 ~ 15478957 (+) True G141755
TU191960 lncRNA downstream 13084 15083593 ~ 15096295 (+) True G141757
TU191976 lncRNA downstream 55506 15126015 ~ 15177465 (+) True G141764
TU191981 lncRNA downstream 55506 15126015 ~ 15177465 (+) False G141764
XM_007238480.3 mRNA upstream 240700 14818945 ~ 14827063 (+) True LOC103038739
XM_007238479.3 mRNA upstream 250367 14812279 ~ 14817396 (+) True LOC103038426
XM_007238478.3 mRNA upstream 283088 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 295762 14759152 ~ 14772001 (+) True LOC103034986
XM_022678086.1 mRNA upstream 321068 14739009 ~ 14746695 (+) True LOC111194324
XM_007236091.3 mRNA downstream 251502 15322011 ~ 15366331 (+) True LOC103042634
XM_022677716.1 mRNA downstream 297009 15367518 ~ 15375404 (+) True LOC111194243
XM_007236093.2 mRNA downstream 305456 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 309169 15379678 ~ 15384906 (+) True LOC103043450
XM_007236094.3 mRNA downstream 309169 15379678 ~ 15384906 (+) False LOC103043450
TU191927 other upstream 10790 15054657 ~ 15056973 (+) True G141740
TU191577 other upstream 537467 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 866765 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 1209158 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 2217821 12842814 ~ 12849942 (+) False LOC103029537
TU192022 other downstream 158201 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 315107 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 343267 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 1877873 16948382 ~ 16967950 (+) True LOC103022185
TU192402 other downstream 1901693 16972202 ~ 16973930 (+) False G142067

Expression Profile