RNA id: TU191994


Basic Information

Item Value
RNA id TU191994
length 2717
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G141771
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15154345 ~ 15209618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgacAGACAAGAGTTTTgtgatataataaataaatataatattgcgatatttaaagacatttttgacAGACTTGTTTCATCACAATGTTTTGACAGATGAAATACATCAACACaagcagattcttaaaaactaCTTCTCAAATACTCTCTTATTCACAGCACATATCCATCATGTTGCCCACCTCCATAATATAATAGGGTCATATTTCATCTATTCatctattgtttaatatcacCCGTTCCCAGCAGGGGTATatgatatggacaaaagtgtaaAATGTGATAACTGTTGGAAATTGATGTGAAACAATGTGACTTAAGATCCTAAATAATTTAAGCTCATCAAAGAATTTTCAGCACTTATCTGTCTCAAGTACCTGTAGCTTGGTGTAtgtgttcactgtggacctctacctcgctctacctccagcctcaTCATGTCAGGTGAGCAGTCTGTAGTGTAAAGGGGTAAAGAGCTCCCTTTTTTGCTGCATGCAGgtaatgcagtttgagtttgctgctgtttacatTGTTCCAGCAGCTGTTTCATTGTGTTTATTgcaaaaacatacagctctggaaaaaaaaaataagagaccacaaagtttctttgattttaaccaaattgaaaacctttggaatataatcaaaaggaagatgaatgatcacaaaccatcaaaccaagctgaactgtcaaagttatccaaaagcagtgtgtaaaactggtggaggagaacatgccaagatgaatgaaaactgtgattaaaaaccagggttattccaccaaatactgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattaattgaggtctgaaagctctgtgtctctttgttatttcagccatttctcattgtctgcaaataaatgctctgaatgaccattttttttatatgttcattttactcaaacatacacctataaatagcaaaatcagcgaaactgatttagaaacctttttccacagctgtatatcgctataaaaatagaaatatgatATATCTTACAGCCCTAGTTGCCAGATTTTTTAATCAGTCAGGCCCTTCTCCTGATTACCAGCTTTTGCTGTAGCTACAAAATTGTGCTGACTTTAGTAAATCAGGTCTTGTAAGCTGGAGTGAGAAAATGATGACTGTATTTCGGCTGTACAAATGACTCATTTCTGATCAGTGTGCTCGGAATTCCACTGCTGTTTTGTTCAGTTAGGACAACGTAACGGTCACATCACACGAAACACAGATTACACCATTACTGGACAGAGGCCCGACACAAACCAGGCATCATAACAGACTGAGAACaccacagagacagagagacagagagatacacacacactgttcacatTCAGACCGCCAGACAGCAGCGGCGGCGGTGGAGAGACCACATTAAAGACGATCAGCGTGGAGGCTGGAAATGGAATGAAATACGTCTCCGTCTCTGTCAGAAGAGGTTTTTGCATTGAAACAGGTAACAGTGGAGGAAGTGGCCATGCTCGAAAAAACCCATTACACCAACAACACTGACCCACGGCCTCCGTCTGATATAAAATGTAACAGCTGACACAGTTTGGCAGTGACATTTCCATTCTTCTAACATCCCCTTGGTTCCCTTTGTCATTACAAACAACCCCATATATCACATTTTCCatacatttcataaaaaaagcaCAGTTTAACAACATTgggtcattaaaaaaaaaaaagccaaaacatGGCCCAACACGGCTGCACTGGATCATTTCAACAAATGAGTTatgtatgtttgcatgtatgtatgtaggttTTGACACAAACTTGACACACAGCTTAATGTAAAAGTGTTTTGCCTTAAAATGATTTTGCACAAAGAACTTCCACTTCCAACATGCCACGCATTACAATCAGAACTTATTTGAAACTGTATTTTCACTGGATATTCTCTTTGGTTTTTGATGTCATTTCAATATTTAAAGATGGCACTATGTTATAATTGACCAAAGTACATACATTTCCTGAACTGGGTGAATGCACTGACTTTTCCAATCACTCGTAGAAGCTCACCTGAGGTCACTTTAATCACACTCAATtaacaaaaacacactgtaaaacaacaGGTTTACAGCAGAAGGACAACACCTTCTAATTAACTTTTATTGGGAACCAATGGAGAaagattttatttaagatttacaTTTTTGGGGCATTTCGATTGGTCTATTTCTCATGACTTTGATGAATGAGGTtcaatttaaataacaaaaaatgccaCATTCAAATTAGGCCAACAAAGTTTAAAATTGAGATAAAAAGATTTTGCATGGTAGCGATGATATTTTGTATTTAGATGCAAAAACTTCTTTATTAGATAGGGATGGGCAATATGGCATCAATACATCATGATACAAGATACgtcaacatacagctctggaaaaaaaataaataaataagaccacttaaaaatgatgagtttctttgattttaccaaattaaaaaccactggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaactgaactgcttggatttctGCACCAGAAGTgacattaagttatccaaaagcagtgtgtaagactggtggaggagaacatcccaAGTtgctctaaataataatatttttatttggaatttgggagaaatgttgtccatactttatagaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191935 lncRNA upstream 38229 15043773 ~ 15116116 (+) True G141746
TU191934 lncRNA upstream 43596 15043773 ~ 15110749 (+) False G141746
TU191960 lncRNA upstream 58050 15083593 ~ 15096295 (+) True G141757
TU191947 lncRNA upstream 73196 15079630 ~ 15081149 (+) True G141753
TU191941 lncRNA upstream 83836 15067763 ~ 15070509 (+) True G141750
TU192016 lncRNA downstream 8890 15218508 ~ 15223310 (+) True G141788
TU192018 lncRNA downstream 13972 15223590 ~ 15238186 (+) True G141790
TU192026 lncRNA downstream 53174 15262792 ~ 15263680 (+) True G141795
TU191953 lncRNA downstream 179169 15388787 ~ 15401904 (+) False G141754
TU191949 lncRNA downstream 182843 15392461 ~ 15401904 (+) False G141754
XM_007238480.3 mRNA upstream 327282 14818945 ~ 14827063 (+) True LOC103038739
XM_007238479.3 mRNA upstream 336949 14812279 ~ 14817396 (+) True LOC103038426
XM_007238478.3 mRNA upstream 369670 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 382344 14759152 ~ 14772001 (+) True LOC103034986
XM_022678086.1 mRNA upstream 407650 14739009 ~ 14746695 (+) True LOC111194324
XM_007236091.3 mRNA downstream 112393 15322011 ~ 15366331 (+) True LOC103042634
XM_022677716.1 mRNA downstream 157900 15367518 ~ 15375404 (+) True LOC111194243
XM_007236093.2 mRNA downstream 166347 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 170060 15379678 ~ 15384906 (+) True LOC103043450
XM_007236094.3 mRNA downstream 170060 15379678 ~ 15384906 (+) False LOC103043450
TU191927 other upstream 97372 15054657 ~ 15056973 (+) True G141740
TU191577 other upstream 624049 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 953347 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 1295740 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 2304403 12842814 ~ 12849942 (+) False LOC103029537
TU192022 other downstream 19092 15228710 ~ 15285457 (+) True G141791
TU191950 other downstream 175998 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 204158 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 1738764 16948382 ~ 16967950 (+) True LOC103022185
TU192402 other downstream 1762584 16972202 ~ 16973930 (+) False G142067

Expression Profile