RNA id: TU192018


Basic Information

Item Value
RNA id TU192018
length 542
lncRNA type inter_gene
GC content 0.52
exon number 7
gene id G141790
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15223590 ~ 15238186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCGGGAGTGTTTCATTTTATCAGAGGGAGGCTGCTCCCCAGGGCTGAAGGGGTCTCTGGTCAGACTTCCTTTGCTGTTCAGGCTGCCGATCTCCGTCTGAGAGCTGGACTGAGACATTCCCTCGAAGAACGgcCTGAGTTTAGGCTTTGGTGTGCTGAGGATGCTGTCCGTCTCCTCCATCTCTGGGCCGCTGTCACTGGGATTATACATCTCCAGACTGTCATACAGCTCGTCCAaatcctcctccacctcctgaATCTGCTCCCGAGACACATGctccaaaccaaacccaacCTCATCCGAAACTTTAAACCTCCTCAGCAGCGCCACAAACTTCTGCTTGATGTTGGGTTGTCTGGTAATAGCCGCACTGGATGTAAGTTTACGTCGGGGTTTCTTCTTCCTCACCTCGTCCTCTTCATCATACAGATACTGTCCGTGAACAGGGTCATCGCTCCCCTCCTGTTCTGATGAGaagctctcctcctcctcttcagaGTCGTTATCTATGTCCGGAGAACGATCGTTCATCTTGGCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192016 lncRNA upstream 280 15218508 ~ 15223310 (+) True G141788
TU191994 lncRNA upstream 13972 15154345 ~ 15209618 (+) True G141771
TU192006 lncRNA upstream 39540 15181633 ~ 15184050 (+) True G141779
TU191976 lncRNA upstream 46125 15126015 ~ 15177465 (+) True G141764
TU191981 lncRNA upstream 46125 15126015 ~ 15177465 (+) False G141764
TU192026 lncRNA downstream 24606 15262792 ~ 15263680 (+) True G141795
TU191953 lncRNA downstream 150601 15388787 ~ 15401904 (+) False G141754
TU191949 lncRNA downstream 154275 15392461 ~ 15401904 (+) False G141754
TU191952 lncRNA downstream 154275 15392461 ~ 15401904 (+) False G141754
TU192050 lncRNA downstream 162788 15400974 ~ 15405120 (+) True G141814
XM_007238480.3 mRNA upstream 396527 14818945 ~ 14827063 (+) True LOC103038739
XM_007238479.3 mRNA upstream 406194 14812279 ~ 14817396 (+) True LOC103038426
XM_007238478.3 mRNA upstream 438915 14779181 ~ 14784675 (+) True b4gat1
XM_022678085.1 mRNA upstream 451589 14759152 ~ 14772001 (+) True LOC103034986
XM_022678086.1 mRNA upstream 476895 14739009 ~ 14746695 (+) True LOC111194324
XM_007236091.3 mRNA downstream 83825 15322011 ~ 15366331 (+) True LOC103042634
XM_022677716.1 mRNA downstream 129332 15367518 ~ 15375404 (+) True LOC111194243
XM_007236093.2 mRNA downstream 137779 15375965 ~ 15378535 (+) True LOC103043145
XM_015602108.2 mRNA downstream 141492 15379678 ~ 15384906 (+) True LOC103043450
XM_007236094.3 mRNA downstream 141492 15379678 ~ 15384906 (+) False LOC103043450
TU191927 other upstream 166617 15054657 ~ 15056973 (+) True G141740
TU191577 other upstream 693294 14528140 ~ 14530296 (+) True G141495
TU191433 other upstream 1022592 14180665 ~ 14200998 (+) True G141410
TU191361 other upstream 1364985 13855603 ~ 13858605 (+) True G141361
TU191033 other upstream 2373648 12842814 ~ 12849942 (+) False LOC103029537
TU191950 other downstream 147430 15385616 ~ 15390415 (+) True G141754
trnae-uuc_20 other downstream 175590 15413776 ~ 15413847 (+) True trnae-uuc_20
XR_002651027.1 other downstream 1710196 16948382 ~ 16967950 (+) True LOC103022185
TU192402 other downstream 1734016 16972202 ~ 16973930 (+) False G142067
TU192403 other downstream 1734016 16972202 ~ 16985295 (+) True G142067

Expression Profile