RNA id: TU192405


Basic Information

Item Value
RNA id TU192405
length 1252
lncRNA type inter_gene
GC content 0.53
exon number 8
gene id G142067
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 16972202 ~ 16985295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggcagGATCTAGcataaataacagaaaaacataCATGTGCAgcaattaaatatgtttaaaaacaaatatgcaaCAGCTGTTAGCTTGTAATGCAAAAGTCACCACCCCTGCTGCTGGAGAGCTACCTTGTAGCAGACTTCAGATCTGCATCAGGGGGAATTGATAAACAGTTGAATCTAATTAATGCCACCAGGAGTGCTTGAGGTTTGTGAGATTTGTGATAGAAGTGTAACCTACAGTTTGATAGTTCATCAGGAGCAGGGTTGGTGACTTCGGTTGCAATGCATAGTAATTTAAGCTTTTAACAAACAGGCCCTCACAGCTGGGCACAGGTCAGCTGCAGGTCACTAACCTGGATTTGCTGGTGGAGCGTCGGCCCCTGTCTCTGGAGCGGGACCTCCTCCTTCTAGGACTCCTGGAGCGCCTGCGGCTCCTGGAGCGGGAGCGCCTGCGGGATCTGCTGCTGGACCGCCTATGACGGGAGCGAGAGCGTGATCTCCTTCGTCTGGATCTAGACCTGGACCTGGATCGGGAATGCTTGCGCTTGCTGTCtttttTCCCAGGCTCTATAGCAGCAGAGATCAGAGACTGGGCCTCTCTGACTCTTTTCATAGCCTCCTCAATCTCCTTGTTAGAAGTATCTGCCTTCAGGGCCATACCTGCAGCCATGGGGTTCAATTTGGGATCCACTGACGACATTAACTTCAGCAGCTGTTCAGCCGAAAGAGCCTGGGGATTCATGCCAGCTCCTGGCATCATGGCAGGACCGCCAAGACCCATTGGGACACCTGCCATCGAAGCTAGAGGGTTTGGTGTTGGTAGCAGTCCTCCACCCGGAAGAAGCCCAGCAACAGCATTGGCAGGAGCCAGCAGAGACAAAGCCTTCGACTCATCCGGAATCACACCTTCTGCATAGGGCACAACTATAAGAGCTCTGTCCACAAACACTGTGTTAGTGAGGTGCTGGGCCACCCCCACAGACTCCTGCTCCTGGAACCGCACAAAGCACACCCGAGACGTCACCGGCATGGTCGAGTCATCTGGAGGGAAGAGCCGGAGCTCCTCGATGGTCCCGAGGAAGCCGAACAGGGTGCGCATCTGCTCGGACGTCGTGCTCGGAGACACGTTGGTCACCTGCACCACGTTCGTGCTGCAGTTCATCTTCAGGCAGGTGGAGACAAACCCAGCGCTTTCAGGACTTTCTCTGCACTCAGATATCCGCCTTTAAACAGCCGCAGGAGATCCGCAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192412 lncRNA upstream 8343 16963665 ~ 16967919 (+) False LOC103022185
TU192411 lncRNA upstream 12748 16963192 ~ 16963514 (+) True G142072
TU192399 lncRNA upstream 77955 16897864 ~ 16898307 (+) True G142065
TU192394 lncRNA upstream 89855 16885916 ~ 16886407 (+) True G142060
TU192381 lncRNA upstream 160575 16815486 ~ 16815687 (+) True G142047
TU192419 lncRNA downstream 21600 17006895 ~ 17061552 (+) True G142079
TU192422 lncRNA downstream 27806 17013101 ~ 17014834 (+) True G142082
TU192432 lncRNA downstream 63155 17048450 ~ 17049952 (+) True G142091
TU192464 lncRNA downstream 159347 17144642 ~ 17145074 (+) True G142119
TU192527 lncRNA downstream 221164 17206459 ~ 17208182 (+) True G142168
XM_007254596.3 mRNA upstream 13916 16948383 ~ 16962346 (+) False LOC103022185
XM_007254595.3 mRNA upstream 35894 16927428 ~ 16940368 (+) True efcab14
XM_015602107.2 mRNA upstream 1476757 15481787 ~ 15499505 (+) True LOC103044680
XM_015602106.2 mRNA upstream 1476757 15481817 ~ 15499505 (+) False LOC103044680
XM_007236099.3 mRNA upstream 1500047 15443821 ~ 15476215 (+) True LOC103044992
XM_007254601.2 mRNA downstream 9044 16994339 ~ 17004804 (+) True rpe65
XM_022678131.1 mRNA downstream 249904 17235199 ~ 17304091 (+) True LOC111194332
XM_022678132.1 mRNA downstream 249904 17235199 ~ 17304090 (+) False LOC111194332
XM_022678134.1 mRNA downstream 249904 17235199 ~ 17304089 (+) False LOC111194332
XM_022678133.1 mRNA downstream 249904 17235199 ~ 17304089 (+) False LOC111194332
TU192402 other upstream 2332 16972202 ~ 16973930 (+) False G142067
XR_002651027.1 other upstream 8312 16948382 ~ 16967950 (+) True LOC103022185
trnae-uuc_20 other upstream 1562415 15413776 ~ 15413847 (+) True trnae-uuc_20
TU191950 other upstream 1585847 15385616 ~ 15390415 (+) True G141754
TU192022 other upstream 1690805 15228710 ~ 15285457 (+) True G141791
TU192434 other downstream 72999 17058294 ~ 17073484 (+) True G142093
TU192525 other downstream 217927 17203222 ~ 17204493 (+) True G142166
TU192788 other downstream 1870941 18856236 ~ 18893509 (+) False G142378
TU192790 other downstream 1870941 18856236 ~ 18858507 (+) True G142378
TU192797 other downstream 1880155 18865450 ~ 18870317 (+) True G142384

Expression Profile