RNA id: TU192434


Basic Information

Item Value
RNA id TU192434
length 979
RNA type TUCP
GC content 0.54
exon number 7
gene id G142093
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 17058294 ~ 17073484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTCCATTGGCAATGTGGGCATTGAGCTTGCGCTCCTCGGTGAGCAGCTCCTCTCGGACCGTGTCGCTCTCCAGGACGCTCTGGAGGGCCGGAGTGTCGTCTCCTGCCACTTCCTGCTCCACGTGCAGGATGGAGATGTGCGCAGGCACGCGGAGGCTGCGGCTGGCCAGCATCTTCAGCAGCGTGGTCTTTCCCAGACCGTTACGTCCCACCAGGCCGTACCTGCGGCCGCTTGCCAAACACAGCTCCGCCCCCTGCAGCAGAGATCTCTCTCCAAATGATACGTCAAAGTTTTCTATGCGGATATCATAACTGCGATTCTTCCCGGACATGTCCACCCGACTCTCCTTCTTACTGCTAGCCTGGCTGGCAGAAGCCTCCTCCAAGACCAGTGGGTTTGAGGGTTTCTGGGAGTCCTTTTCATTTCTCCGCTCATGCTTTGCCCTCAGTTTGGCCTCCGCCTTCTCCAACTTCTTGGCATCTACAGTCGTACTCTGATTTCTCTTGACCATCCAAATGCCCTGCACATCATTAGTAGCTGATCCAGCAGAATCCACAGAGATTTGAGACAGCTGAACTGGAGCATCCAGCAACACCTGCCTCGGGTTTGAGTTGCAGTTAGACAACTTAAGTGTATTAAACAACTGGAGACAGATATCTCGGACGTCGTCCTCGTTTTTCTCAGCAGCTACTTCCTGGAGAACCCCACCAATGGCCTCGAACACTTCCTCTCCATCTTCAAAATCAGAACCACCACTGTCTAGCACTCCGGTGATATAGTCAAACACTTCGGTGTCAATTTCGGGGAACTCGCTTTTCAGGATGTCCACGTAAGTCGCCATGATACGAACAGACACACCGGCCCCTGCTGCCGAGGAGCTTCACTCAGCTGCGTTCCGTCACCGCGGTGCAgcatgggaaatgtagttttaccGACTTAGCAGAGGAGCCAACTGAACTAGCACCAGCTAAAAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192432 lncRNA upstream 8342 17048450 ~ 17049952 (+) True G142091
TU192422 lncRNA upstream 43460 17013101 ~ 17014834 (+) True G142082
TU192405 lncRNA upstream 72999 16976262 ~ 16985295 (+) False G142067
TU192404 lncRNA upstream 72999 16979995 ~ 16985295 (+) False G142067
TU192412 lncRNA upstream 90375 16963665 ~ 16967919 (+) False LOC103022185
TU192464 lncRNA downstream 71158 17144642 ~ 17145074 (+) True G142119
TU192527 lncRNA downstream 132975 17206459 ~ 17208182 (+) True G142168
TU192600 lncRNA downstream 923690 17997174 ~ 18001176 (+) True G142222
TU192598 lncRNA downstream 948762 18022246 ~ 18024672 (+) True G142220
TU192607 lncRNA downstream 962304 18035788 ~ 18037584 (+) True G142228
XM_007254601.2 mRNA upstream 53490 16994339 ~ 17004804 (+) True rpe65
XM_007254596.3 mRNA upstream 95948 16948383 ~ 16962346 (+) False LOC103022185
XM_007254595.3 mRNA upstream 117926 16927428 ~ 16940368 (+) True efcab14
XM_015602107.2 mRNA upstream 1558789 15481787 ~ 15499505 (+) True LOC103044680
XM_015602106.2 mRNA upstream 1558789 15481817 ~ 15499505 (+) False LOC103044680
XM_022678131.1 mRNA downstream 161715 17235199 ~ 17304091 (+) True LOC111194332
XM_022678132.1 mRNA downstream 161715 17235199 ~ 17304090 (+) False LOC111194332
XM_022678134.1 mRNA downstream 161715 17235199 ~ 17304089 (+) False LOC111194332
XM_022678133.1 mRNA downstream 161715 17235199 ~ 17304089 (+) False LOC111194332
XM_022678151.1 mRNA downstream 1680323 18753807 ~ 18785358 (+) True LOC103034870
TU192403 other upstream 72999 16972202 ~ 16985295 (+) True G142067
TU192402 other upstream 84364 16972202 ~ 16973930 (+) False G142067
XR_002651027.1 other upstream 90344 16948382 ~ 16967950 (+) True LOC103022185
trnae-uuc_20 other upstream 1644447 15413776 ~ 15413847 (+) True trnae-uuc_20
TU191950 other upstream 1667879 15385616 ~ 15390415 (+) True G141754
TU192525 other downstream 129738 17203222 ~ 17204493 (+) True G142166
TU192788 other downstream 1782752 18856236 ~ 18893509 (+) False G142378
TU192790 other downstream 1782752 18856236 ~ 18858507 (+) True G142378
TU192797 other downstream 1791966 18865450 ~ 18870317 (+) True G142384
TU193111 other downstream 2662822 19736306 ~ 19868292 (+) True G142620

Expression Profile