RNA id: TU192525


Basic Information

Item Value
RNA id TU192525
length 1272
RNA type TUCP
GC content 0.52
exon number 1
gene id G142166
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 17203222 ~ 17204493 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCACCTTCACACCTGTTCCCACTCCAGATCCCACACAGTGCGAAACAACGGAGCGTTAGAAAAAGCGTACAGAAACGTAgcgtaaaaaaaatttaaatacgtGAACATGAAAGGATATGGCCACTCTATGATCCTTCTCGCGTACTTTCTGATGATGTTGTTCTCGGCGAAAATGAAGAGCGACCTGTTGACGGTGAGGCAGTTGTGTCTGGCCGGGATTGGGTTGTAAAGGGCCATGGTCCGAGCGCGCTGAGCTTTGGCTTGCTTGGACTCCCCGGCGGTCGCCTCGGCGCCGTCGCCCTCCGCGCCCATCTCTCGAGGCGCGTCGCCTTCAGGCTGGGCCATGTCTGGAGACACGGGAACAACGCACGCGCGGGAATGCAGAACACTGGAGCACGAGCAGCGACCACAACAGAAAATAAACGTCCCACTTTCACTCCATTCCAAGGGGAACTTCTCGGGGATGGTTGGGGTAGACGATGCTCCGTGTTTTTGGCGCTTACATTCCACCAACTTTTGGCTTTTAGGAAAGTTCACCTACTCGTGGATGAAGCTGGTGGATCGATTCCTGGAATATGTAGCGCGTGGAACAGCGTGGACGTGGAGCATGCATCTCCAAACGGATCGTCTTCTTGGACActtgaaaacttgaaaaaaaatgttttactcaCTTCGTCCAAACaccaaaagcacaaaaaataccaaaaataccAAAAGTAGCAAAAGTAACAACGGTCTCAAAAGTAGAAGTACCAGACGCCAGAGCTTCTCCAACGTGTTCCCTCAGCTTTTCTTCCTCCACTTTCTCCGAACTCCCTCCACTAATCCCGCCGAACCTCATACCAGCGCATCACTTGGACCGTAGGTTCCGTTCCCTCCATCCCATCAGAGCGCGCGCATCCCGCGTGCGCTAAAGTCGAGCTCTGAAGCGGTTCGGTTCTTCTAGCTGAGGAAACGCAAGAGCGAATGCAAGAAGAGCAGCAAAGCAGGAGCGCGCGCGTGCGAGAAGGAAGGAGGCAGTGCTGGAGGagaaatcatcatcatcaccatcatcatcatcatcatcatcactagcAGCAGCTCAGAGATCCTTCAACACTCCTCCTCTtcccctcctccacctcctcctcctgctaTACCCcctccatcaccaccatcaccatcacatcACCACTCCACCACTCcaccaccatccatccatccactaccTTCTCCCACGGATTTCAGCTCAgcaattcatttatttcccccAGGCACATCGGGACACAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192464 lncRNA upstream 58148 17144642 ~ 17145074 (+) True G142119
TU192419 lncRNA upstream 141670 17006895 ~ 17061552 (+) True G142079
TU192432 lncRNA upstream 153270 17048450 ~ 17049952 (+) True G142091
TU192422 lncRNA upstream 188388 17013101 ~ 17014834 (+) True G142082
TU192405 lncRNA upstream 217927 16976262 ~ 16985295 (+) False G142067
TU192527 lncRNA downstream 1966 17206459 ~ 17208182 (+) True G142168
TU192600 lncRNA downstream 792681 17997174 ~ 18001176 (+) True G142222
TU192598 lncRNA downstream 817753 18022246 ~ 18024672 (+) True G142220
TU192607 lncRNA downstream 831295 18035788 ~ 18037584 (+) True G142228
XR_002650988.1 lncRNA downstream 856524 18061017 ~ 18062315 (+) True LOC111194204
XM_007254601.2 mRNA upstream 198418 16994339 ~ 17004804 (+) True rpe65
XM_007254596.3 mRNA upstream 240876 16948383 ~ 16962346 (+) False LOC103022185
XM_007254595.3 mRNA upstream 262854 16927428 ~ 16940368 (+) True efcab14
XM_015602107.2 mRNA upstream 1703717 15481787 ~ 15499505 (+) True LOC103044680
XM_022678131.1 mRNA downstream 30706 17235199 ~ 17304091 (+) True LOC111194332
XM_022678132.1 mRNA downstream 30706 17235199 ~ 17304090 (+) False LOC111194332
XM_022678134.1 mRNA downstream 30706 17235199 ~ 17304089 (+) False LOC111194332
XM_022678133.1 mRNA downstream 30706 17235199 ~ 17304089 (+) False LOC111194332
XM_022678151.1 mRNA downstream 1549314 18753807 ~ 18785358 (+) True LOC103034870
TU192434 other upstream 129738 17058294 ~ 17073484 (+) True G142093
TU192403 other upstream 217927 16972202 ~ 16985295 (+) True G142067
TU192402 other upstream 229292 16972202 ~ 16973930 (+) False G142067
XR_002651027.1 other upstream 235272 16948382 ~ 16967950 (+) True LOC103022185
trnae-uuc_20 other upstream 1789375 15413776 ~ 15413847 (+) True trnae-uuc_20
TU192788 other downstream 1651743 18856236 ~ 18893509 (+) False G142378
TU192790 other downstream 1651743 18856236 ~ 18858507 (+) True G142378
TU192797 other downstream 1660957 18865450 ~ 18870317 (+) True G142384
TU193111 other downstream 2531813 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 3012786 20217279 ~ 20220147 (+) False rnf138

Expression Profile