RNA id: TU192788


Basic Information

Item Value
RNA id TU192788
length 406
RNA type TUCP
GC content 0.52
exon number 3
gene id G142378
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18856236 ~ 18893509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGGGCAGATGTGGTGTGACGCAGGCGGCCACAGGCACCAGTGTGATGGCTAAGATGAAGCCCAGGGAGAAGTTAATGAGAGCCGTGCAGCCCAACAGCACAGCCAGGTGCACATCATCCATGTGTGTAAGCACACTGTACCtacctgtgtgtgttgtggggcAGTGCCAGGCCTGCAGTGTAGATGGCTATAGCAGTGAGAACTACAGCCTCGGTCTCGGACACGGGGAAGTGCTCTACTGCAGTCTCCTGAGAGAGAACCGGCAGGGTGTACAGAGCCACGCCCGTCAGGTGACTGATCACCACCGGAGTCAACACGGACAGAACCCCTGGGCTGGACGGCTGGAGGGAAAATTTTATATGAACagagcacaaaaataataataataataataataataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192782 lncRNA upstream 2216 18853400 ~ 18854020 (+) True G142377
TU192786 lncRNA upstream 2216 18853453 ~ 18854020 (+) False G142377
TU192785 lncRNA upstream 2216 18853515 ~ 18854020 (+) False G142377
TU192787 lncRNA upstream 2240 18853453 ~ 18853996 (+) False G142377
TU192784 lncRNA upstream 2240 18853515 ~ 18853996 (+) False G142377
XR_002650989.1 lncRNA downstream 30484 18923993 ~ 18930488 (+) True LOC103030232
TU192814 lncRNA downstream 57705 18951214 ~ 18957062 (+) True G142397
TU192818 lncRNA downstream 97680 18991189 ~ 18994237 (+) True G142401
TU192837 lncRNA downstream 226743 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA downstream 226743 19120252 ~ 19121602 (+) False G142416
XM_007240018.2 mRNA upstream 30093 18821418 ~ 18826143 (+) True exosc4
XM_007240015.2 mRNA upstream 39839 18794903 ~ 18816397 (+) True LOC103034112
XM_007240016.3 mRNA upstream 39839 18794905 ~ 18816397 (+) False LOC103034112
XM_022678151.1 mRNA upstream 70878 18753807 ~ 18785358 (+) True LOC103034870
XM_022678131.1 mRNA upstream 1552145 17235199 ~ 17304091 (+) True LOC111194332
XM_022677719.1 mRNA downstream 37370 18930879 ~ 18932145 (+) True LOC111188235
XM_022678160.1 mRNA downstream 76377 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA downstream 76377 18969886 ~ 18987227 (+) False LOC103047721
XM_022678164.1 mRNA downstream 201257 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA downstream 201257 19094766 ~ 19119530 (+) False LOC103046799
TU192525 other upstream 1651743 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 1782752 17058294 ~ 17073484 (+) True G142093
TU192403 other upstream 1870941 16972202 ~ 16985295 (+) True G142067
TU192402 other upstream 1882306 16972202 ~ 16973930 (+) False G142067
XR_002651027.1 other upstream 1888286 16948382 ~ 16967950 (+) True LOC103022185
TU193111 other downstream 842797 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1323770 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1889074 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2705173 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2752396 21645905 ~ 21646705 (+) True G143122

Expression Profile