RNA id: TU192790


Basic Information

Item Value
RNA id TU192790
length 408
RNA type TUCP
GC content 0.52
exon number 2
gene id G142378
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18856236 ~ 18893509 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGGGCAGATGTGGTGTGACGCAGGCGGCCACAGGCACCAGTGTGATGGCTAAGATGAAGCCCAGGGAGAAGTTAATGAGAGCCGTGCAGCCCAACAGCACAGCCAGGTGCACATCATCCATGTGTGTAAGCACACTGTACCtacctgtgtgtgttgtggggcAGTGCCAGGCCTGCAGTGTAGATGGCTATAGCAGTGAGAACTACAGCCTCGGTCTCGGACACGGGGAAGTGCTCTACTGCAGTCTCCTGAGAGAGAACCGGCAGGGTGTACAGAGCCACGCCCGTCAGGTGACTGATCACCACCGGAGTCAACACGGACAGAACCCCTGGGCTGGACGGCTGGAGGGAAAATTTTATATGAACagagcacaaaaataataataataattattattattattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192782 lncRNA upstream 2216 18853400 ~ 18854020 (+) True G142377
TU192792 lncRNA downstream 1844 18860351 ~ 18860741 (+) True G142380
TU192794 lncRNA downstream 5684 18864191 ~ 18870899 (+) True G142382
TU192799 lncRNA downstream 7800 18866307 ~ 18895007 (+) True G142385
XR_002650989.1 lncRNA downstream 65486 18923993 ~ 18930488 (+) True LOC103030232
TU192814 lncRNA downstream 92707 18951214 ~ 18957062 (+) True G142397
XM_007240018.2 mRNA upstream 30093 18821418 ~ 18826143 (+) True exosc4
XM_007240015.2 mRNA upstream 39839 18794903 ~ 18816397 (+) True LOC103034112
XM_007240016.3 mRNA upstream 39839 18794905 ~ 18816397 (+) False LOC103034112
XM_022678151.1 mRNA upstream 70878 18753807 ~ 18785358 (+) True LOC103034870
XM_022678133.1 mRNA upstream 1552147 17235199 ~ 17304089 (+) False LOC111194332
XM_022677719.1 mRNA downstream 72372 18930879 ~ 18932145 (+) True LOC111188235
XM_022678160.1 mRNA downstream 111379 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA downstream 111379 18969886 ~ 18987227 (+) False LOC103047721
XM_022678164.1 mRNA downstream 236259 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA downstream 236259 19094766 ~ 19119530 (+) False LOC103046799
TU192525 other upstream 1651743 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 1782752 17058294 ~ 17073484 (+) True G142093
TU192403 other upstream 1870941 16972202 ~ 16985295 (+) True G142067
TU192402 other upstream 1882306 16972202 ~ 16973930 (+) False G142067
XR_002651027.1 other upstream 1888286 16948382 ~ 16967950 (+) True LOC103022185
TU192797 other downstream 6943 18865450 ~ 18870317 (+) True G142384
TU193111 other downstream 877799 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1358772 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1924076 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2740175 21598682 ~ 21601365 (+) False LOC103047556

Expression Profile