RNA id: TU192837


Basic Information

Item Value
RNA id TU192837
length 1217
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G142416
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19120252 ~ 19121602 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttccagtgcattATCTAATTACCCAAGTGTAAGTAAACTCATTGATCTGATTACTGTTCAGATTTTTagcatttaaacacttttattagTATCATCACTGtagtataaatgatttacagaCATCGTGTGACTGTAATAGTGACCAGAAGGCACCGTATGGGTCTGTTCCACTGATAGACTGTCTAGATGTGAAGAGAACGCCACTGTGCAGCAGGatgagcttgttttttttttttttttgaggtgttttaatgatgttgtgtgtgagtgttgcaGAATATTGTGTCTTTAGTTCTGTGTGTAAACCCAGGTTTGATGATCAAAAGGACTGCCAAAGAGAGTTATGAGAGAACCTTCATGTAGTTTAGGTACGGTAGttataatatgtttatatgtttattctgATGGGATCTCTTCTAGTTttataaatgtacataaatattaatattataacagAACAGAGCAGATTATAGTTAACAGTTTAGAGATGTTTTAGGGAAGCATGATCtcttgcagtgtatatatacgtacagcaataaatacatacatatttatatatataatataatataatttgtgttttctttagttCTGTAATGTTGCCTTATGTTAAAACCCCAATTTTGCCAGTTCTGTGTTAAGCTGTCCAATAAGGGTCGACTCGACTGAGAGTACTGTAATGGTTGATTTTACCAATCATGTATTTCCAATTGACTGAAGCATTAAATCTGATACAGGTGTAGAATTATAGTATTAATAAGCGAATGTCATTTTTCTGAGGTGTTAAAAATAATTTGGAGGAATCTCTGTATTGCCCTGAATCACATTGGATTATAAATTATCTGATCAATAATTATAAAATCTGGCACAAAAACAGAAAGATTGCAATGTGAACTGACAATACATACAAATTCATAaccccaatatatatatatatatatatatatatatatatatgtgatttCTGTGAATGTTACAGACATACCTGCATGTGTTCACCTATTATGCTGCATTTTGTGCACTTtactgtgttatttattttttaacagatgATGTCCACTGACTGATCAGATAGATTGTAAAAGCCAATACACTTTAGAGGATGTGTGTTTTGTAAGCCAGTAGTTCTGTAACTTTCCATATTGTTTATGTGTGAATGAATgacgaagaaaaaaaatatacatttttacaatacattaaagtcatttaagtctta

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192818 lncRNA upstream 126015 18991189 ~ 18994237 (+) True G142401
TU192814 lncRNA upstream 163190 18951214 ~ 18957062 (+) True G142397
XR_002650989.1 lncRNA upstream 189764 18923993 ~ 18930488 (+) True LOC103030232
TU192799 lncRNA upstream 225245 18866307 ~ 18895007 (+) True G142385
TU192794 lncRNA upstream 249353 18864191 ~ 18870899 (+) True G142382
TU192855 lncRNA downstream 48925 19170527 ~ 19170796 (+) True G142432
TU192857 lncRNA downstream 91764 19213366 ~ 19219047 (+) True G142434
XR_002651029.1 lncRNA downstream 108567 19230169 ~ 19282116 (+) True LOC111194334
TU192875 lncRNA downstream 292030 19413632 ~ 19417683 (+) True G142450
TU192880 lncRNA downstream 298058 19419660 ~ 19422462 (+) True G142453
XM_022678164.1 mRNA upstream 722 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 722 19094766 ~ 19119530 (+) False LOC103046799
XM_022678160.1 mRNA upstream 132811 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA upstream 133025 18969886 ~ 18987227 (+) False LOC103047721
XM_022677719.1 mRNA upstream 188107 18930879 ~ 18932145 (+) True LOC111188235
XM_022678166.1 mRNA downstream 304392 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 307240 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 966694 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 971058 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 1081046 20202648 ~ 20220149 (+) True rnf138
TU192788 other upstream 226743 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 249935 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 261745 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 1915759 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2046768 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 614704 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1095677 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1660981 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2477080 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2524303 21645905 ~ 21646705 (+) True G143122

Expression Profile