RNA id: TU192855


Basic Information

Item Value
RNA id TU192855
length 270
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G142432
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19170527 ~ 19170796 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggcaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggatgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacctggattgtatccaaaaaacataaaaccacggctgatcaaatcacggcagaattcaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192837 lncRNA upstream 48925 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA upstream 48925 19120252 ~ 19121602 (+) False G142416
TU192818 lncRNA upstream 176290 18991189 ~ 18994237 (+) True G142401
TU192814 lncRNA upstream 213465 18951214 ~ 18957062 (+) True G142397
XR_002650989.1 lncRNA upstream 240039 18923993 ~ 18930488 (+) True LOC103030232
TU192857 lncRNA downstream 42570 19213366 ~ 19219047 (+) True G142434
XR_002651029.1 lncRNA downstream 59373 19230169 ~ 19282116 (+) True LOC111194334
TU192875 lncRNA downstream 242836 19413632 ~ 19417683 (+) True G142450
TU192880 lncRNA downstream 248864 19419660 ~ 19422462 (+) True G142453
TU192883 lncRNA downstream 260635 19431431 ~ 19432138 (+) True G142455
XM_022678164.1 mRNA upstream 50997 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 50997 19094766 ~ 19119530 (+) False LOC103046799
XM_022678160.1 mRNA upstream 183086 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA upstream 183300 18969886 ~ 18987227 (+) False LOC103047721
XM_022677719.1 mRNA upstream 238382 18930879 ~ 18932145 (+) True LOC111188235
XM_022678166.1 mRNA downstream 255198 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 258046 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 917500 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 921864 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 1031852 20202648 ~ 20220149 (+) True rnf138
TU192788 other upstream 277018 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 300210 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 312020 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 1966034 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2097043 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 565510 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 1046483 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1611787 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2427886 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2475109 21645905 ~ 21646705 (+) True G143122

Expression Profile