RNA id: TU192875


Basic Information

Item Value
RNA id TU192875
length 2808
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G142450
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19413632 ~ 19417683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTATTAACAGGACAGAGCCAAGTATCCTGAACAGGAAACTTCATCTGCATGAAAGTTAACAGAATGttagatttatagactaataaCAGCAATAAAACCATCCTACCTACCAAGAGCAGTCCCCCTTGTTATATTATCTGCGCTAAATCAGAATTGTGTAAATTGCTCTGTGCAGTTCCAGTGAATGCCAGAAATTTGCATCCTACTGGTGCCTGTGTAGTTGTCTTGTTTTCCCTGTTAACTTCCCACAAGAAAATGATCAGCGACACGATTGACATCACCTGGCCCCCCTAAAAATAGCAGCATGACTTGTTACAATTTATACATTCTATTGCCGTAAGTATCCATTTCACCAATTCAATTATACgaaaagaaaatactttaagtacacacacaaaccaatcAGTCATAACATTTCATTTATCCCTGATATGGAATCCATAATTTCCCTGTGGTGGAATCCATTAATTTAAATGATCAGATATGTTTTGGCAATGCAATATTAGGCAGATGATATTGAAGGTACAGCTGATTGTATACAGACATAATGGCACCGGTCTGCTGATCTACTTGGCCTTCACTGCAATGTCAGTGTCAGTATCTCATGCAATAGCAGTGCTGATTACATTAGTGACTTACCTTACTGACACACCTGTACTGCCCAGCAAACAAAGCAGAAGCTACAACTGCACTCAATTGATACACAGgcatctgtttaaaaaaaaaaggtgtcacAACATCCAAAtttatgaaaagaaaaaaaaattaaaacatccaATACAATTGTAAGTCAATAATGCCTAATTGCCTTGTATGCTTCAATTAGGTGGTGCAGGTACGCATCAATGacctatttaaagaaaaaaaggttaataaaTTATTTGGAGTATTTAATCAGTTGTCGCCAAACTATCACACCTAGCAAGAACATTGTGCCAAAAACCTTGCTTCTTTTAGGGTTCTTGAACCGAAAGTCCAAGTTTCATGGTCTTAATATacttggttagttttggttttacactgcagttcagTGAGCACACCAAAGAATTTATATGGTACTTATCAGGATGAGTGTAACAGATTCCCctgattcattttattattattaacttataATAGTCTACGATAAAAGTAGATATTGGAAACAAAGGCATGATCTGTTGagcctaggcctgtcacaataagaagCACACAAAAAATAGCATTGCACAAAAGAAAAGTAATCTAAAGAGTTTTCAATCCTTTTTTCTATCTCAACCCTCTCAACCACATACACACTGATTCAAAGTAATTTCGGACTCATACCTCATCAGCCAGCCACCCATCTACCTGTAGCGTCCTAAAAGAGGAATCATATAATTTGTAGGGACCAACAACCGCTTCCACCCGCCCAACGTCCTTTAAAGACCACAGTCTCAGTACTGCAAAAAGGAAATATGATCACATTAGTCTcactttaaatggttaaattaaACAAGACATGGTCAAACACAGTGTAAAACATAGATGCCCAACAGGCAACATACAAACACTGATAAGGAAATATGAAAGGCTGGACATTACAACCAAAAGATCATATAAAATATGCCCAATGTGAATGGGGCAGAATGGTCCATGTAGTAGAATAAAGCATACCCAATAGGTCCCACAAGAGGGCTGTCCACATTACTATGGATCCCGATCTACGACTTCCAAGccaataaaagctgaaatacaTAACATGTTCTGATAATTTCTGCAGTtgttgcagaaaaaaataactacGATAAGAGGTTATTTTGTCCACCCTTTAGACCAAGAATGGCCAACTGGCCAAGAACGGCCAACAGGCCAAGAACGGCCAACAGGCCAAGAACGAGGATAAACGGAAACGAAATTGAGGATGAACCGGTGGGTTAAGCCAAACTGGCCAAACATTGACCAACAGGTCAAAACTGGAGCACTGCATGAAGGGCACCTTCTTCTTGTGTGGTTCTGGGTTTCGAAATAGGATTCTCAGCTACTGTGCTTAGGTTTTGAGGTTCCGTTGTTTTGTTGGAGAAAACAATAACGGATGGCCTCCTGCTGTTTGGGCTGCTGTTGCCTGCTGGCTGAACTGGTTGTGACCTTAAACCATCTTCGCTTCTCCTATATGGTTTAAGGTGGGAGATGCTGAATTTGTTTTTCAAGGGAGCTCCATGGTGGTTCTTCAGATGTACAAGCTTCCCACACACTGATGTAATAATGTATGGACCAGAGAAATCGGGCTCCATTCTTCCCCCCTTCCTTCCACGCTTCCTCATATTGAGTAGGAGAACTTCATCCCcaacactgtataaaatgtgcTTGTActttttctgaacttttttggCATATgcctctttctgtttctcctgGGATTTGCCCATGTtctcttcagctgtttttttaacagcctccatgtgttttttttgagaAGAAAGATATTCACCGTATCCTCCTTCAGGGAGAATGACTGTGGAAAGCTATGATGAGAGTTAAGAATAAAGTAGTACAACAATTAAAGTTACATTTTTGGTTATGCAAACATTGAAGACATACTTTAATTTTAGCATAATAACTGATTGTTTAAAATAGTTGTCTAAATCCACTAGTTTATGGATCTGTACATCTAGCGCAGTCACGTATATATCTAAATCTATATACTAAAGCaaaggtttgtttatttatttttttatcagatgtGCCCATTTAgtcaaaaaaagcattttaatcgCCACCTttccaattatatatatatatatatatatatatatatatacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651029.1 lncRNA upstream 131516 19230169 ~ 19282116 (+) True LOC111194334
TU192857 lncRNA upstream 194585 19213366 ~ 19219047 (+) True G142434
TU192855 lncRNA upstream 242836 19170527 ~ 19170796 (+) True G142432
TU192837 lncRNA upstream 292030 19120252 ~ 19121602 (+) True G142416
TU192839 lncRNA upstream 292030 19120252 ~ 19121602 (+) False G142416
TU192880 lncRNA downstream 1977 19419660 ~ 19422462 (+) True G142453
TU192883 lncRNA downstream 13748 19431431 ~ 19432138 (+) True G142455
TU192890 lncRNA downstream 14991 19432674 ~ 19433057 (+) True G142458
TU193091 lncRNA downstream 103994 19521677 ~ 19521888 (+) True G142603
TU193102 lncRNA downstream 276253 19693936 ~ 19696283 (+) True G142614
XM_022678164.1 mRNA upstream 294102 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 294102 19094766 ~ 19119530 (+) False LOC103046799
XM_022678160.1 mRNA upstream 426191 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA upstream 426405 18969886 ~ 18987227 (+) False LOC103047721
XM_022677719.1 mRNA upstream 481487 18930879 ~ 18932145 (+) True LOC111188235
XM_022678166.1 mRNA downstream 8311 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 11159 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 670613 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 674977 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 784965 20202648 ~ 20220149 (+) True rnf138
TU192788 other upstream 520123 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 543315 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 555125 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2209139 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2340148 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 318623 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 799596 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1364900 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2180999 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2228222 21645905 ~ 21646705 (+) True G143122

Expression Profile