RNA id: TU192880


Basic Information

Item Value
RNA id TU192880
length 953
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G142453
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19419660 ~ 19422462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacaaatacaacacaCAGATTTTATACACGGTATTGTAACACACTTACTTCATTAACAAATTCTCGCCCCTGATCTGAGAGAATTCTTTTTGGACAGCCATGACGGTAAATTATAGAACATAAGTGTTTCCCCACTTCAGCTGCAGATTTACTTCTTAGTGGAAAGGCCTCAACCCACTTGGAGAAGTAATCAGTAACTGTCAATATGTATTGACAGCCATCTGATGTTTCAGGTAATGGGCCAGTTAGGTCAATGCCAACAAGCTCCCACACCGCAGACACCtaccagtaaaaaaacaaaaacaaaaaaaaaaccaattgCATCATGTATTTCGAAAGAACTGGTCATCAGAATTGTGTTACTGAATGCATTTACCTTAATGCACTGTAGCGGCTGTGCAACATCCAGGGGTTTCCCTACTTTCTGGCACTTGTCGCATTCCAAGACCTTCAGGCATAAATGTGTTAATATACCAATGACACTTGCAATTATATAATagttaaaacagaaaaagaaataaacataccCAATTTTCTATATCAATGGTCATGCCTGGCCAGTAAAACCTGGCACACATGGCACTACGTGTCTTCATGACACCCGAGTGTCCACCGATTGGGCTGGAATGAAACTCCTCGAACATAACCCTGGCgtcctccttttttttaatgacctttcttttcatttcaaAGAAGAGGTCTCCATCTGAATTGAAAATGGACCACACAAAAGTTTATAGCACAAAGCACATTCAAATAAAGTTACTAAGCCTAtaaaatctatcctacctgcagtactgatactggtagcgcattctgataaggtaatttagtctataaatctatcctacctacagtactgatactggtagcacattctgataaggtaatttagtctataaatctatcctacctacagtgtaaatgctggtagcacattctgataaggtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192875 lncRNA upstream 1977 19413632 ~ 19417683 (+) True G142450
XR_002651029.1 lncRNA upstream 137544 19230169 ~ 19282116 (+) True LOC111194334
TU192857 lncRNA upstream 200613 19213366 ~ 19219047 (+) True G142434
TU192855 lncRNA upstream 248864 19170527 ~ 19170796 (+) True G142432
TU192837 lncRNA upstream 298058 19120252 ~ 19121602 (+) True G142416
TU192883 lncRNA downstream 8969 19431431 ~ 19432138 (+) True G142455
TU192890 lncRNA downstream 10212 19432674 ~ 19433057 (+) True G142458
TU193091 lncRNA downstream 99215 19521677 ~ 19521888 (+) True G142603
TU193102 lncRNA downstream 271474 19693936 ~ 19696283 (+) True G142614
TU193107 lncRNA downstream 301983 19724445 ~ 19728971 (+) True G142619
XM_022678164.1 mRNA upstream 300130 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 300130 19094766 ~ 19119530 (+) False LOC103046799
XM_022678160.1 mRNA upstream 432219 18969886 ~ 18987441 (+) True LOC103047721
XM_022678161.1 mRNA upstream 432433 18969886 ~ 18987227 (+) False LOC103047721
XM_022677719.1 mRNA upstream 487515 18930879 ~ 18932145 (+) True LOC111188235
XM_022678166.1 mRNA downstream 3532 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA downstream 6380 19428842 ~ 19431174 (+) False LOC111194335
XM_007240884.3 mRNA downstream 665834 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 670198 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 780186 20202648 ~ 20220149 (+) True rnf138
TU192788 other upstream 526151 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 549343 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 561153 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2215167 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2346176 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 313844 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 794817 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1360121 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2176220 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2223443 21645905 ~ 21646705 (+) True G143122

Expression Profile