RNA id: TU192890


Basic Information

Item Value
RNA id TU192890
length 281
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G142458
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19432674 ~ 19433057 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatcaggagaatctctcactatctttaagaaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaactacttctaaccccatttccttcttcccctccttcactcctctatccctttatttcccttcgacctcctttaagccctatctaaaaatgggttatctaaattcctattacttttgtacttcattattgtaagtcgctttggacaaaagcgtctgccaaatgaaatgtaatgtaatgtaatgtaatgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192883 lncRNA upstream 536 19431431 ~ 19432138 (+) True G142455
TU192880 lncRNA upstream 10212 19419660 ~ 19422462 (+) True G142453
TU192875 lncRNA upstream 14991 19413632 ~ 19417683 (+) True G142450
XR_002651029.1 lncRNA upstream 150558 19230169 ~ 19282116 (+) True LOC111194334
TU192857 lncRNA upstream 213627 19213366 ~ 19219047 (+) True G142434
TU193091 lncRNA downstream 88620 19521677 ~ 19521888 (+) True G142603
TU193102 lncRNA downstream 260879 19693936 ~ 19696283 (+) True G142614
TU193107 lncRNA downstream 291388 19724445 ~ 19728971 (+) True G142619
TU193109 lncRNA downstream 291388 19724445 ~ 19728971 (+) False G142619
TU193150 lncRNA downstream 610046 20043103 ~ 20097234 (+) True G142656
XM_022678166.1 mRNA upstream 1500 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA upstream 1500 19428842 ~ 19431174 (+) False LOC111194335
XM_022678164.1 mRNA upstream 313144 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 313144 19094766 ~ 19119530 (+) False LOC103046799
XM_022678161.1 mRNA upstream 445447 18969886 ~ 18987227 (+) False LOC103047721
XM_007240884.3 mRNA downstream 655239 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 659603 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 769591 20202648 ~ 20220149 (+) True rnf138
XM_022678174.1 mRNA downstream 790719 20223776 ~ 20245141 (+) True mep1b
XM_022678180.1 mRNA downstream 1123709 20556766 ~ 20574038 (+) True LOC111194338
TU192788 other upstream 539165 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 562357 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 574167 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2228181 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2359190 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 303249 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 784222 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1349526 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2165625 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2212848 21645905 ~ 21646705 (+) True G143122

Expression Profile