RNA id: TU193091


Basic Information

Item Value
RNA id TU193091
length 212
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G142603
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19521677 ~ 19521888 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttggacaatgaaactgaaacacctggttttagaccacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttatgtttttttggatacaatcccggttagcacccgaacatccctttcagacagcttcctcttacagcgtccacagttaatcct

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192890 lncRNA upstream 88620 19432674 ~ 19433057 (+) True G142458
TU192883 lncRNA upstream 89539 19431431 ~ 19432138 (+) True G142455
TU192880 lncRNA upstream 99215 19419660 ~ 19422462 (+) True G142453
TU192875 lncRNA upstream 103994 19413632 ~ 19417683 (+) True G142450
XR_002651029.1 lncRNA upstream 239561 19230169 ~ 19282116 (+) True LOC111194334
TU193102 lncRNA downstream 172048 19693936 ~ 19696283 (+) True G142614
TU193107 lncRNA downstream 202557 19724445 ~ 19728971 (+) True G142619
TU193109 lncRNA downstream 202557 19724445 ~ 19728971 (+) False G142619
TU193150 lncRNA downstream 521215 20043103 ~ 20097234 (+) True G142656
TU193098 lncRNA downstream 594869 20116757 ~ 20117450 (+) True G142610
XM_022678166.1 mRNA upstream 90503 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA upstream 90503 19428842 ~ 19431174 (+) False LOC111194335
XM_022678164.1 mRNA upstream 402147 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 402147 19094766 ~ 19119530 (+) False LOC103046799
XM_022678161.1 mRNA upstream 534450 18969886 ~ 18987227 (+) False LOC103047721
XM_007240884.3 mRNA downstream 566408 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 570772 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 680760 20202648 ~ 20220149 (+) True rnf138
XM_022678174.1 mRNA downstream 701888 20223776 ~ 20245141 (+) True mep1b
XM_022678180.1 mRNA downstream 1034878 20556766 ~ 20574038 (+) True LOC111194338
TU192788 other upstream 628168 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 651360 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 663170 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2317184 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2448193 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 214418 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 695391 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1260695 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 2076794 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 2124017 21645905 ~ 21646705 (+) True G143122

Expression Profile