RNA id: TU193107


Basic Information

Item Value
RNA id TU193107
length 4353
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G142619
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 19724445 ~ 19728971 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgttggcacaaagcagctttacagaaacatgattacaggacaaagaatcaggcaaaacattacacatagaaaatacagaatacagaacccccagtgagcgcggaggcaaggaaaaactccctcagagctgcaggaggaggaagaaaccttgggaggaccaagactcacattaaagggggaccatcctaccactggtcaaacggcttttaaatagaaatttaaaaagtcttttatacatccatataggttttatgtactcaggagtgtaatagcgccactaatggcttggatgtaatctgtagtggagagtaagatggtcgatgagcagctgatctgtggtggtggtggagaagagctgacttcagaaacttccatcagtctggccggacaggagacgcgagagcctgagggtccaacatcggtatcgggtcagacaggtgggcagtcagtaactcggaggaaggcagagagatggaattagttttgactggatttatgcaaaactgagaatattaaaacattatcagagtgtggcaaatgactccggcagaactgaataaaacagcctaactaaaggcagagagccagaaggtaacatagacatggaggcaccctgaaacaccagcatccacccactccaccgtccacaaacctgagtgaccgtgtgcagtgggagaacaacagcaccagcatctcagtttaccacaatttcctctgtccatgaacccctgaatctgcagccttatctaaagggaaaaacattaattaccaaaagctaaactaaacaagtaagttttcagtctagacttaaagattgagactgtgtctgagtcccgaacatattcggggagattattccagagttgaggcgctttataagagaaagctcttcctcctgcagagctcctctgaattttaggcactactaataaaccagcaccctgagatctgagtaatcgcggtggttcataacaggagatgaggtcttgtaaatactcaggagcgagtccgtgtagggctttatacgttaacaggagaattttatagtctatgcggaatttgactggaagccagtgcagtgctgatagtactggactaatatggtcaaattttctagttttagtaaggaccctggctgcagcattttgaactagctgaagtttatttaagttactgccggaacatccagacagtagcgcattacaataatctagccttgaggtaataaaggcatgtactaatttttctgcgtcatgcagtgatagggcatttcttagcttggcgatgttacggaggtgtagaaaagctgttctagtaacattagatatgtgtttatcgaatgctagatctgaatctatgataactccaaggtttttagctgctgaaccaggggtggctgagaagtcagccagatttagcattaagtctgataatttatttctagcagctttggggcctaataggagaacttctgttttatcactatttaataggaggaagttgtgcgacatccatgattttacatcttctacacaatcctcgattttctttaatctcactctgtcatcaggtttggctgatatgaagagctgcgtgtcatccgcataacaatgaaaattcacattgtgttttctaataactttgcccagtgggagcatatataatgtaaataataacggtcctaatatagagccttgtggaattccatatcttaccttggtataactggaagacatatcatttatcctcacaaactgatagcgatcggttaagtacgatttaaaccatgctaaggcagttccggttacaccgaccatgttctctagtctttctaaaaggatagtatgatctattgtatcaaaggctgcgctcagatcgagaagtacgagtaaggaaacacagccttggtcggcggctataagtagatcgtttgttattctaactaaagctgtctcagtgctatgataaggcctaaatccagattgaaatttttcatagatctggtttctttgcaggtaagagcaaagttgttgggctacagctttttctaaaatcttagaaataaacggtaagtttgaaataggtctatagttagacagtacactaggatcaagatttggtttcttgatcagaggtttaattacagctgttttaaaggctttgggtacatggcccagggcgagcgatgagtttactatcattaacagaggtttaattatatctggcagtacctgttttaataattttgtgggaacagcatcaagtgtgcaggttgtgctgtttgaagaggagataattttctctagttctagctgtggaagtgggttaaagacttccaacctaacttcagtaacagagttttgttctagatcagccagaccagatgacagagaggatgtaatatttatctgtttaattttatcccgaatgttttcaattttactattgaagaagtccataaaatcgttgctggtgtaaatggctggaatctgaggttcagtacctgcctggtttttagttaatttggaaataacactaaagagaactctaggattatttttatttatctcgatctgtgaggccagatatgctgagcgggctttattaagttcttttctatatttaacaagactgtctttccacgcagagtgaaacacttccagtttagttgatcgatatttacgctctaaatttcgtactaactgctttaaggtacgagtttgatcattgtaccacggtgcgagctttttctgtctctctattttgtgtttaaggggtgctacaacatctaaggtagagcgaaaggtattttctaaaccttcggttagtttgtctagttctactgggtctacaggagagtacattagagttgataagtctggaagcttatctgtaaattgttgggctgtaaaaggcgtaattgaacgttttacagagtagctaggggatgtacgtatattatgactaagatgtaatttaaatgaaataaggtaatgatctgaaattgcggaggtttgagaacgaatattcgggttatctatgctcacacccagggtcaaaactaaatccagagtatgattacagtaatgagtaggtcctgttatattttgaataataccaactgagtctaaaatcgatgtgaatgccttttttaatggatcatccaatttttcgaaatgaatgttgaagtctccaactataatcactttatcattacttactgctaagtctgtgacaaaatcactaaattcttttaaaaattctaaatagggccctggtggtctgtagatgttaattaaagaaaatgcattcttttttgtaactggattaattatactggtgtaaagaagctcaaaagaagtaaaattttcatagtgtttctgattgctaactaaggtactttggaaaagtatgcagaccccacctcctctaccggacaatctcggattgtgtatataattatagcctgcaggggtggcttcatttaatgctacatattcatttggcctaatccaggtttctgtcagacacagaacatcgaatttctgatcagttatcatttcattcaccagaactgcttttgaatttagagatctaatattaagtaaaccaatctttaggcttgaaatgttagtactacagtctggatatgattgtttaatataagttaagttatttagatttactgttttagttttttgatgtttttgtttgactcgggggacagacacagtctgaatacattggtatctaggtaacgtctctttgcagctcgcagacggtcggttaagcctctctgtctgcggcctggtcccggctctggattgtcagcagcttctaatactactctgccgactaactaaaagactatgagctatgctgcatgaaagtaaggcagcaccctcccgcgtggggtggacaccatccctacctaaaagaccaggcttgccctcaaagtgtagccagttatctataaagcccacatgattttctgcacaccacttggacatccagcggttcagcgaagaaagcctgctgtaagcttcatcaccacgcctcattgggatggggccagagcagattacctcctcggacagcgtctgggcctgtttaatcacctctttaatattagccttagttacttcagactgccgcagacgaatatcattggcccctacatgaattactaccctcgaatatctcctattccctaacctaaggttgccactaatgtccggtgctctggctcccggtaaacaagtaactgttgccgctggtgcccctaaaggagtagctaatttcacgtgtcggacgatagagtctcctatcaccagagtacctttaacaggctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193102 lncRNA upstream 28162 19693936 ~ 19696283 (+) True G142614
TU193091 lncRNA upstream 202557 19521677 ~ 19521888 (+) True G142603
TU192890 lncRNA upstream 291388 19432674 ~ 19433057 (+) True G142458
TU192883 lncRNA upstream 292307 19431431 ~ 19432138 (+) True G142455
TU192880 lncRNA upstream 301983 19419660 ~ 19422462 (+) True G142453
TU193150 lncRNA downstream 314132 20043103 ~ 20097234 (+) True G142656
TU193098 lncRNA downstream 387786 20116757 ~ 20117450 (+) True G142610
TU193232 lncRNA downstream 409155 20138126 ~ 20140399 (+) True G142726
TU193278 lncRNA downstream 669782 20398753 ~ 20414640 (+) True G142765
TU193282 lncRNA downstream 680652 20409623 ~ 20434382 (+) True G142769
XM_022678166.1 mRNA upstream 293271 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA upstream 293271 19428842 ~ 19431174 (+) False LOC111194335
XM_022678164.1 mRNA upstream 604915 19094766 ~ 19119530 (+) True LOC103046799
XM_022678165.1 mRNA upstream 604915 19094766 ~ 19119530 (+) False LOC103046799
XM_022678161.1 mRNA upstream 737218 18969886 ~ 18987227 (+) False LOC103047721
XM_007240884.3 mRNA downstream 359325 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA downstream 363689 20092660 ~ 20115213 (+) True ripk1
XM_022678173.1 mRNA downstream 473677 20202648 ~ 20220149 (+) True rnf138
XM_022678174.1 mRNA downstream 494805 20223776 ~ 20245141 (+) True mep1b
XM_022678180.1 mRNA downstream 827795 20556766 ~ 20574038 (+) True LOC111194338
TU192788 other upstream 830936 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 854128 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 865938 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2519952 17203222 ~ 17204493 (+) True G142166
TU192434 other upstream 2650961 17058294 ~ 17073484 (+) True G142093
TU193111 other downstream 7335 19736306 ~ 19868292 (+) True G142620
TU193252 other downstream 488308 20217279 ~ 20220147 (+) False rnf138
TU193349 other downstream 1053612 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 1869711 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 1916934 21645905 ~ 21646705 (+) True G143122

Expression Profile