RNA id: XM_022678173.1


Basic Information

Item Value
RNA id XM_022678173.1
length 1089
RNA type mRNA
GC content 0.51
exon number 8
gene id rnf138
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20202648 ~ 20220149 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaagtgaaactGGAAGTgcaggcttgtgtgtgtgtgaagtgtgtgtgttgagcagACGGAGAGAGACAGGCTTTAAATCAGCTGTGTTTAAACGGAAGAAGAGTTTCAGAGGATCAGCAGCGACTGCACTCACTAAATTCATCCAGAGCTGAGAAATCAGTCAGAAACAGCAGCACTATGAGTCCAGAATCCAGCACTGCGGACCAGATCACGAGCGCAGACTCAGAGGAGGACTACGACTGTCCCATCTGCCAGGAGGTCTTTAAAACACCGGTCCGCACAAAGAGCTGCAGACATGTGTTCTGCAAAAGTTGCTTTGAGACTGCAGTGAAGAGTCAGGGGGCTCACTGCCCGATGTGTCGGAGCCCTGTGTCTGAGAAAGCGTGTAAAGCAAAGGATGTCCAGCAGAGGATGAGGGAGAGAAGCAGCCGGTGCAGAGCCTGTGGAGCAGTGAAATTTCTCAGCAAGATGAGACTCCACTATAAAAGCTGCAGGAAGTACAAAGAGGAATACGGGCCAATCAGTGATGCACCACCACCTCCCTCCTCCCAGAACCCAGTTCAAATACCAAGCCACAGCACTGGATTTATCCCCATCATCCCAGTTTACACACCAGTGAACAGTCTTCACAGCAGCACACTGCCCTGGATGCAGTTCCCCCTTTTCCTGCCTCCTGCATCTCCACAACCACTAAGTGTCTCCAGTGCAGGGAGAGTGTACCCGTGTCCATACTGCCCTCTGGAGGGACTGAGGGACATGGCTTTGGTCCAGCACTGTGTGAACCAGCATGCAGGAGAAATCAGACCAACTgtGTGCCCAATCTGCAGCCAGTTGCCCTGGGGCGAGCCTTACTACTGTAGCCGTAACCTTATTGGCCACATGCGCCTCAGACACTCCTTCAGCTACGCCGGATACATGaatgaagaggaggatgaagacatCCAGGTCTGTCGGGCTCTGCAGAATTCAGTCCAGGACTTTCCTATAATCTAcgccaatcagccataacattaaaaccacttgccttttttttagcattgtGCCACCAAAACAGCTCTAACGGCAAGATGTTTTGACCCAGTTATCTT

Function

GO: NA

KEGG:

id description
K10668 RNF138; E3 ubiquitin-protein ligase RNF138

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193232 lncRNA upstream 62249 20138126 ~ 20140399 (+) True G142726
TU193098 lncRNA upstream 85198 20116757 ~ 20117450 (+) True G142610
TU193150 lncRNA upstream 105414 20043103 ~ 20097234 (+) True G142656
TU193107 lncRNA upstream 473677 19724445 ~ 19728971 (+) True G142619
TU193109 lncRNA upstream 473677 19724445 ~ 19728971 (+) False G142619
TU193278 lncRNA downstream 178604 20398753 ~ 20414640 (+) True G142765
TU193282 lncRNA downstream 189474 20409623 ~ 20434382 (+) True G142769
TU193284 lncRNA downstream 203273 20423422 ~ 20499753 (+) True G142771
TU193293 lncRNA downstream 313642 20533791 ~ 20534057 (+) True G142780
TU193309 lncRNA downstream 356560 20576709 ~ 20580373 (+) True G142788
XM_007240884.3 mRNA upstream 87435 20088296 ~ 20115213 (+) False ripk1
XM_007240883.3 mRNA upstream 87435 20092660 ~ 20115213 (+) True ripk1
XM_022678166.1 mRNA upstream 771474 19425994 ~ 19431174 (+) True LOC111194335
XM_022678167.1 mRNA upstream 771474 19428842 ~ 19431174 (+) False LOC111194335
XM_022678164.1 mRNA upstream 1083118 19094766 ~ 19119530 (+) True LOC103046799
XM_022678174.1 mRNA downstream 3627 20223776 ~ 20245141 (+) True mep1b
XM_022678180.1 mRNA downstream 336617 20556766 ~ 20574038 (+) True LOC111194338
XM_022678179.1 mRNA downstream 391346 20611495 ~ 20667477 (+) True LOC111194337
XM_022678176.1 mRNA downstream 495395 20715544 ~ 20774155 (+) True LOC103044091
XM_022678177.1 mRNA downstream 495395 20715544 ~ 20774155 (+) False LOC103044091
TU193111 other upstream 334356 19736306 ~ 19868292 (+) True G142620
TU192788 other upstream 1309139 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 1332331 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 1344141 18856236 ~ 18858507 (+) True G142378
TU192525 other upstream 2998155 17203222 ~ 17204493 (+) True G142166
TU193349 other downstream 562434 20782583 ~ 20790122 (+) True G142820
TU193733 other downstream 1378533 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 1425756 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 1650527 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 2315536 22535685 ~ 22610447 (+) False G143324

Expression Profile