RNA id: TU193349


Basic Information

Item Value
RNA id TU193349
length 494
RNA type TUCP
GC content 0.49
exon number 3
gene id G142820
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 20782583 ~ 20790122 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaacAGCCTTCAACAGAGAACCTCCAGCTTCCAGTCTGAGACTGTGGGATTTTCCTCCATCCACAGAATCATGTACTTTCTTCCCCCCATCGTAGAAGAAGATGAGACTGAGTCGTTCTTTCAGAGAGCTTTGTCTGGGCAAGTGTCTCGGGTTCAGTCTCCTCAGCACGAACTCAGAAGCTCCAAACACTTTATCGGCTACGAGGATCATGAAGCTGCTCCCATCCAATCAGAGGCTCAAGAGAGCTCAGGTCGACAGAAGAGGCTGGACAGTTTTCGCTCCAGCTCGAGTTTGGCTGAGATAACCATGAGGGTCCAAAATGACCTGAGAAAAGAACAAGATGAACCAGCTAGGAGGCAAAGATCTTCAACACAGAGATTATCCAGAAGCTCTTCAGAGATTGCATCCCCACTAGTGGTACAAATGGTCCCCAGGGGGCGCTCTGTTGGAGGCACATCTGATCCTGTACAAAGAACGAGTAAAAAAGCAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193342 lncRNA upstream 74084 20701686 ~ 20708499 (+) True G142814
TU193319 lncRNA upstream 118718 20658901 ~ 20663865 (+) True G142796
XR_002651030.1 lncRNA upstream 178227 20599666 ~ 20604356 (+) True LOC111194339
TU193309 lncRNA upstream 202210 20576709 ~ 20580373 (+) True G142788
TU193293 lncRNA upstream 248526 20533791 ~ 20534057 (+) True G142780
TU193353 lncRNA downstream 9118 20799240 ~ 20799576 (+) True G142823
TU193355 lncRNA downstream 16639 20806761 ~ 20807209 (+) True G142825
TU193356 lncRNA downstream 16639 20806761 ~ 20807209 (+) False G142825
TU193364 lncRNA downstream 50807 20840929 ~ 20841214 (+) True G142833
TU193365 lncRNA downstream 59656 20849778 ~ 20850015 (+) True G142834
XM_022678176.1 mRNA upstream 8428 20715544 ~ 20774155 (+) True LOC103044091
XM_022678177.1 mRNA upstream 8428 20715544 ~ 20774155 (+) False LOC103044091
XM_022678179.1 mRNA upstream 115106 20611495 ~ 20667477 (+) True LOC111194337
XM_022678180.1 mRNA upstream 208545 20556766 ~ 20574038 (+) True LOC111194338
XM_022678174.1 mRNA upstream 537442 20223776 ~ 20245141 (+) True mep1b
XM_022678181.1 mRNA downstream 13178 20803300 ~ 20812844 (+) True LOC111194340
XM_015608630.2 mRNA downstream 98841 20888963 ~ 21005781 (+) False LOC103041877
XM_007231054.3 mRNA downstream 98846 20888968 ~ 21008006 (+) True LOC103041877
XM_007231060.3 mRNA downstream 98846 20888968 ~ 21005781 (+) False LOC103041877
XM_007231053.3 mRNA downstream 98847 20888969 ~ 21008006 (+) False LOC103041877
TU193252 other upstream 562436 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 914291 19736306 ~ 19868292 (+) True G142620
TU192788 other upstream 1889074 18856236 ~ 18893509 (+) False G142378
TU192797 other upstream 1912266 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 1924076 18856236 ~ 18858507 (+) True G142378
TU193733 other downstream 808560 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 855783 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 1080554 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 1745563 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 1801663 22591785 ~ 22610447 (+) True G143324

Expression Profile