RNA id: TU193729


Basic Information

Item Value
RNA id TU193729
length 816
lncRNA type sense_over
GC content 0.47
exon number 1
gene id plag1
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21569082 ~ 21579724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGCGGAGGACGCTCCCAAGCTGAATACTGCTGCTGCCACATCCGCTGGAGAAACGACACCATCTCTGGACTTCCTGTCTCCGCTGTTCAACTTCCTGCCCTATGGTCAAGGGGCGGGGCCTGCCCTGGGGGTTTCCTACAGCCAGGAGGAAGGGCTGCCCATAATAACGCCCTCCCAAGATGTGCCTGACCCTCTAGGTGCACTTCACACGCTCCCGCACCCACCCACGCTCACACAGACGCATGGGCTCACTTCCAGTTACACGCACTCACAAAGCCTGAATACAACCACCACCCTGCCTCGATTCCACCAGGCCTTCCAGTGACCCAATGTAAATGTACGCACGTACCTAGCTACCTTAGCACTTACTCGAAAGCATACCCACACTTTACTGTCAACTTGGCACttaattgtaaacaaaaaaaacacaacattgtGACTCTCTTTCTCAAGCCAGTAACACGGTTATAATATATGTGCCTTTGAGAACATATCACTTACTTGTTTATATCTGGAGGCGTTTTAGCAATAGAGGATGTTGAACATCACCTGACAGCTGTCATTCAAAATGAAACAATCACTTTGATAAAGCATGCGTGCCTGCAAAGCAGAGCTCAGTTTGCAGTGAAGTTTTGCTCTCAAATGCTGAGAGCATGTAGCTTTCAAAACCCTCCCATTTAGCACTTTGAACTTCTAATGATGCGGAAGTTCCATCaaagctaaaaaatatatatttttcagattctttttgttgttgttgttgatctTCATTCTCATTTGTTGGCCCATAAGCTGTTGGGTACTGAAATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193667 lncRNA upstream 118312 21459895 ~ 21460361 (+) True G143058
TU193660 lncRNA upstream 128626 21449795 ~ 21450047 (+) True G143052
TU193636 lncRNA upstream 173998 21395691 ~ 21404675 (+) True G143034
TU193605 lncRNA upstream 188748 21362598 ~ 21389925 (+) True G143020
TU193594 lncRNA upstream 253814 21320890 ~ 21324859 (+) True G143010
TU193730 lncRNA downstream 1936 21581424 ~ 21582666 (+) True G143112
TU193732 lncRNA downstream 54754 21634242 ~ 21642858 (+) True G143114
XR_002650971.1 lncRNA downstream 76291 21655779 ~ 21658620 (+) True LOC111194179
TU193757 lncRNA downstream 121334 21700822 ~ 21701945 (+) True G143127
TU193812 lncRNA downstream 131878 21711366 ~ 21715175 (+) True G143172
XM_007231068.3 mRNA upstream 16623 21530341 ~ 21562050 (+) True LOC103045570
XM_007231067.3 mRNA upstream 51450 21509741 ~ 21527223 (+) True penk
XM_022677723.1 mRNA upstream 229041 21339580 ~ 21349632 (+) True LOC111194246
XM_007231062.3 mRNA upstream 239941 21333746 ~ 21338732 (+) True LOC103043942
XM_007231056.3 mRNA upstream 570667 20888970 ~ 21008006 (+) False LOC103041877
XM_007231072.2 mRNA downstream 12552 21592040 ~ 21598440 (+) True rps20
XM_022677639.1 mRNA downstream 20195 21599683 ~ 21611682 (+) True LOC103047556
XM_022677638.1 mRNA downstream 20195 21599683 ~ 21611682 (+) False LOC103047556
XM_022677649.1 mRNA downstream 44905 21624393 ~ 21632573 (+) False LOC103047292
XM_007231074.3 mRNA downstream 46831 21626319 ~ 21632573 (+) True LOC103047292
TU193349 other upstream 788551 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 1358526 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 1710381 19736306 ~ 19868292 (+) True G142620
TU192797 other upstream 2708356 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 2720166 18856236 ~ 18858507 (+) True G142378
TU193733 other downstream 19194 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 66417 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 291188 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 956197 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 1012297 22591785 ~ 22610447 (+) True G143324

Expression Profile