RNA id: XM_007231069.3


Basic Information

Item Value
RNA id XM_007231069.3
length 2262
RNA type mRNA
GC content 0.51
exon number 3
gene id plag1
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21569082 ~ 21579724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGACATGTTACCTAGCCAATAAGAATCGACAAGTGGGCGTGGTTATCGAGTGGGCGTGGTCTATCCGGGTTCGGCTGCACCGCAGCGCATAGCCTACACAATGGCTGCTGGAAAGAGGAGAAAGCAAACAATTTTCAGGCCCGCCGCGTCCAGcaaaaaatatgagaaaaaaattattaaaaattcgGAGAAGAGTTGAAAGTCCAGAAAAACGCTCTAGAAAGGATGTTAAGGCTCCCACGGGCCTGGTCTCTCCGTGGTGTTGAAGATTCGGCCTCTCTTGCTCCGTCAGCATTCGGACACACTGCACGTGTCCACCGCGTGGCCAGCCCGTGCTAAGTTGCCATGGCCACAGTCTCCCCTGATGATGACTGCCCCAACCCGGCAGAGCGTGACCGAGCGAGGAAGAGGAGGCTGGAGGGAAAAGGGAGGAAGAACTTCCTGTGTCAGCTATGTGAGAAGGCCTTCAACAGCGTGGAGAAGCTGAAGGTGCACTCTTACTCTCACACGGGCGAGAGGCCGTACCGCTGCACACACAACGACTGCACCAAGGCCTTCGTCTCAAAGTACAAACTGCTACGGCACATGGCCACACACTCACCAGAGAAGACCCATAAGTGCAGCTACTGTGAGAAGATGTTTCATCGCAAAGACCACCTGAAGAACCACCTTCACACGCATGACCCCAACAAAGAGGCCTTCAGCTGCACAGAGTGCGGCAAGAGCTACAACACCAAGCTGGGCTTTCGACGGCACCAGGCCCTCCACTCTGCTCACCACGGAGACCTCACCTGTCAGGTGTGTCTGCAGCCGTACCCAAGCACCACTTTGCTGTTGGAGCACCTGCGTAGCCATGCTGGCAAGAGTGCCACTGGGGCTAAGGAGAAGCGCCACCAGTGCGAGCACTGCGAGCGGCGCTTCTACACCCGCAAGGACGTGCGTCGTCACCTGGTGGTACACACAGGCCGCAAGGACTTCCTGTGCCAGTACTGTGCCCAGCGCTTCGGCCGCAAGGACCACCTGACCCGGCATGTGAAGAAGAGCCACGCCCACGAGCTGCTGCGGGTGAAAGCAGAGCCAATGGAGCTGCTGGAGCCACACCAAACTCCAACATCGGGATCCCTGGCATTACGCTACCCGATAGGTCACACGTCCTACTCGCCACCGCCCCCTCTGAGAGCGGAGATCGAAAGCTATCTCCTAGAGCTGCAGGCGGAGGACGCTCCCAAGCTGAATACTGCTGCTGCCACATCCGCTGGAGAAACGACACCATCTCTGGACTTCCTGTCTCCGCTGTTCAACTTCCTGCCCTATGGTCAAGGGGCGGGGCCTGCCCTGGGGGTTTCCTACAGCCAGGAGGAAGGGCTGCCCATAATAACGCCCTCCCAAGATGTGCCTGACCCTCTAGGTGCACTTCACACGCTCCCGCACCCACCCACGCTCACACAGACGCATGGGCTCACTTCCAGTTACACGCACTCACAAAGCCTGAATACAACCACCACCCTGCCTCGATTCCACCAGGCCTTCCAGTGACCCAATGTAAATGTACGCACGTACCTAGCTACCTTAGCACTTACTCGAAAGCATACCCACACTTTACTGTCAACTTGGCACttaattgtaaacaaaaaaaacacaacattgtGACTCTCTTTCTCAAGCCAGTAACACGGTTATAATATATGTGCCTTTGAGAACATATCACTTACTTGTTTATATCTGGAGGCGTTTTAGCAATAGAGGATGTTGAACATCACCTGACAGCTGTCATTCAAAATGAAACAATCACTTTGATAAAGCATGCGTGCCTGCAAAGCAGAGCTCAGTTTGCAGTGAAGTTTTGCTCTCAAATGCTGAGAGCATGTAGCTTTCAAAACCCTCCCATTTAGCACTTTGAACTTCTAATGATGCGGAAGTTCCATCaaagctaaaaaatatatatttttcagattctttttgttgttgttgttgatctTCATTCTCATTTGTTGGCCCATAAGCTGTTGGGTACTGAAATGCCAGCGTTTGAGTGACAGTGTCAGAAATCTACACAGCCAAAGGCAACCAAACCCCTCAGAGCCAGAGTGAGGAAGGCTCATCTcgttttgcttttatttttttattattattttttttttctgatggcCATTTGCCTTCATGCTGCTGCTCATTTTAAGGGCCTAAAACGTTATCAACGCAGATCTGCTTCACAGTACAAAGCAATAAAGGGAAACATGGACTGACTATACAAATCAAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K19484 PLAG1; zinc finger protein PLAG1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193667 lncRNA upstream 108721 21459895 ~ 21460361 (+) True G143058
TU193660 lncRNA upstream 119035 21449795 ~ 21450047 (+) True G143052
TU193636 lncRNA upstream 164407 21395691 ~ 21404675 (+) True G143034
TU193605 lncRNA upstream 179157 21362598 ~ 21389925 (+) True G143020
TU193594 lncRNA upstream 244223 21320890 ~ 21324859 (+) True G143010
TU193730 lncRNA downstream 1700 21581424 ~ 21582666 (+) True G143112
TU193732 lncRNA downstream 54518 21634242 ~ 21642858 (+) True G143114
XR_002650971.1 lncRNA downstream 76055 21655779 ~ 21658620 (+) True LOC111194179
TU193757 lncRNA downstream 121098 21700822 ~ 21701945 (+) True G143127
TU193812 lncRNA downstream 131642 21711366 ~ 21715175 (+) True G143172
XM_007231068.3 mRNA upstream 7032 21530341 ~ 21562050 (+) True LOC103045570
XM_007231067.3 mRNA upstream 41859 21509741 ~ 21527223 (+) True penk
XM_022677723.1 mRNA upstream 219450 21339580 ~ 21349632 (+) True LOC111194246
XM_007231062.3 mRNA upstream 230350 21333746 ~ 21338732 (+) True LOC103043942
XM_007231056.3 mRNA upstream 561076 20888970 ~ 21008006 (+) False LOC103041877
XM_007231072.2 mRNA downstream 12316 21592040 ~ 21598440 (+) True rps20
XM_022677639.1 mRNA downstream 19959 21599683 ~ 21611682 (+) True LOC103047556
XM_022677638.1 mRNA downstream 19959 21599683 ~ 21611682 (+) False LOC103047556
XM_022677649.1 mRNA downstream 44669 21624393 ~ 21632573 (+) False LOC103047292
XM_007231074.3 mRNA downstream 46595 21626319 ~ 21632573 (+) True LOC103047292
TU193349 other upstream 778960 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 1348935 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 1700790 19736306 ~ 19868292 (+) True G142620
TU192797 other upstream 2698765 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 2710575 18856236 ~ 18858507 (+) True G142378
TU193733 other downstream 18958 21598682 ~ 21601365 (+) False LOC103047556
TU193751 other downstream 66181 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 290952 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 955961 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 1012061 22591785 ~ 22610447 (+) True G143324

Expression Profile