RNA id: XM_022677639.1


Basic Information

Item Value
RNA id XM_022677639.1
length 2876
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC103047556
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21598682 ~ 21611682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTGTTTTCAGAGGTCGGCCTCGTTCTGACTGTCAGACAGTTTAATTCCTGTTATTAAACcagttaatatgttttaataaatctgtCCTTCtgcttttattcagttttattcagtatcGGAGGAGCTGAGGGAGGTGAAGGGCTCTTCGTACAGTGACATTTCTCTCTATAGTCTCtcgtgttttgtgtgtttggtaaGAACAGCAGGCTCATATAAACACGAACAGTCGGGTCAGAGGTTGGTGTATTTTAGTGTAAAGgtttcctttttattatttagttatggCGGCTAATATTGATCTGACTCATGAGGGCACACTGATTGTGGCCATGGAGTCTACAGCCTGTGACCCTCACCACGCTTCTCTACCAGAGCTTTCTGGACTCTCCTCAATCACCTCCCAGAGTGAGTTTGTAGATGGTTCTGAGCAGCAACTTCGGGTGTATCTCAGAGTTCGTCCTTTCAGTAAAGAAGAGCTCAACAACAATGAAGACCAGGGTTGTGTTGTTCTGGAGAACACAGAAACTGCTGCACTTCACGCTCCTAAAGGTTCTGCCACAATGAAGAGCAGTGAGAAGGGAATCGGCCAGCAGCTTCACAAGTTCAGCTTCACCAAGATCTTTGGGTCAGAGTCGACTCAGGCAGAGTTCTTTGATGGAACAATCAGACTTCAAGTGCAGGACTTCCTGCAGGGCAGAAATGCGCTAGTGTTCAGTTATGGAGTGACCAACGCTGGAAAAACGCATACTATTCAAGGTTCTCCAAAGGATCCTGGGATTCTGCCTCGTGCTCTGGAGGTGGTGTTCAGGCACATCAATGGCCGCATGTATGAGCACATGGACCTTAGGCCGTATCTGAGTTCTGATGTGCAGCAGCTGGACCCAGATCAGATCAGGGCAGAGAGATGTGCCAAGGCAGCACTCTTCAGTCTTCTCAAAGAGGAATCAGAGTCTTCCAGAAATTGCAGGAGTAGgagctcctcctcttcctcaatCAACAGCCTGTCTTTTTCTGGAGTCTCTTATGACCAGACAGTGGACAGTGTGGAGGTAGCTGTGGATGACGTGCAGTGTGTCTACTCTTTATGGGTGGCGTACTATGAGATCTATAATGAGCAGGTGTATGACCTGCTTCAGCCAAGTCTCACCAACAAAACAAAGAGGCGTCCTGCACTGCGTGTGTGTGAGGACAGTGCTGGAAACTCGTATGTCCGAGATCTGAGGTGGGTAAACATACAGGCAGCTGAGGAGGCGAATAAGGTGCTGCGTGTTGGAAATAAAAACCGCAGTGCTGCAGCCACCAAAATGAACCAGTCATCCAGCAGAAGCCACAGCATCTTTACTATCAAGCTGATGCGTATTGATGGTGGCAATGTCAATGGAATTTCAGAGCTCTCTCTGTGTGACCTGGCTGGTTCAGAGCGATGCAACAAGACTAAAACGTTTGGGGAGCGTCTGAAGGAGGCGGGAAATATTAACAACTCACTGCTGATCCTGGGAAAGTGCATTGCAGCCTTGCGCAATCAAAATGACCGGGTGAAGAGCAGCTACATTCCATTTCGTGAGAGCAAGCTTACCCGCCTCTTCCAGGGTGTGTTCTGTGGCCGTGGTAAAGCCTCTATGATTGTAAACATCAATCAGTGTGCCTCCACTTATGACGAGACCCTCCACGTCATGAAGTTTTCTGCTGTGGCCAAAGAGGTGCTTCAGGTTATCCCGCCACGCTCCCTTGAGTCTCTGGCTCCCAGACTGATTGGTCGAGATGGTAAACCTTTGCTAAGCAACAGTGTGATTGACTGCCAGGCAGTGGATGATTACCTGTCAGAAGATGAGCTGTTGGATGGTGATGAAGATGCAGACATGTCAATACTACCTCAGGAGGAGCTTTTAAGTTTGGTGGAGAGTCTGCGAGCAAAGCTGTTGGCAGAGCGAAAGAAAAATCTCCAGCAGGAGATACAGATACGCAGAGAGATGGGTGATGCCATGCTTCAGCAGATCATGGAGATTGAGGAGATTCACAGTCGTCAGATGGCTGATTTGAAGGAGAACTATGAGGAGAAGATGGACAGCACATTTGAGATGTATAAAGAGGCGCTGAAGGAGCACGCCTACCAGTGTGCTCTGGAACGCCTGGAGGATGATTACGTCCCTCTGGAGGAATACACAGAAGTGCAGGACCGAGCCAAAGAGCTCGAGAGGCGTGTGAATGAATTGGAATGGAAACAGGAAGCTTCTGCCCCTGTTACAGCTACTCCTGCCTCAGCTGTCCAGCAAGACGACTCTACACAGACTGACCCAGTTCAGTCGTCCACTGAGGAGATGGaTACTGACCGATTTAAACTTCTCTACAAGGAGAAATGTGCTGTGGAACAACTGTGTGCAGAAAAGCAAGAGTTGATTGTGTCTCTTGAGAAGCGGCTCCATGAGCTGAACGAAACCCTGCAGGAAGCTGGAGAAAGCTACATGGAGAAACTCGCTGAGGTCCAGAATCTCcagaacaaactgaactctCAGGAGCGAGAAGCTGAGCGGTTGCAGCGTGAGCTCACTGATAAAGAGGGGGAGGTGCGAGCTCTGAAGGAGGAGGTGACCAAGCTGATGGTGGACTCTGCAGGCCCGCCTCGTCAGAAACGAGGACTGCTGGTCAACATCAAAGAATCTGTGTCCACCCCATCTACTGGAAACCTGTGCCGCACAATCCGAAAATCTGTGCGCACTACTACAACATCTCTGAGGAAGAAGCCCAGCTGACTGGCTAGACTGTGCTGTTTCTGTGATTAGATGGGTGTctgaccttttttcttttatgtaatgttcgtttatttatgtaataaaaatttTAACACTACCAAACTGCAGTGTCTGGTGAAATTAT

Function

GO:

id name namespace
GO:0000910 cytokinesis biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193730 lncRNA upstream 17017 21581424 ~ 21582666 (+) True G143112
TU193729 lncRNA upstream 20195 21578673 ~ 21579488 (+) False plag1
TU193667 lncRNA upstream 139322 21459895 ~ 21460361 (+) True G143058
TU193660 lncRNA upstream 149636 21449795 ~ 21450047 (+) True G143052
TU193636 lncRNA upstream 195008 21395691 ~ 21404675 (+) True G143034
TU193732 lncRNA downstream 22560 21634242 ~ 21642858 (+) True G143114
XR_002650971.1 lncRNA downstream 44097 21655779 ~ 21658620 (+) True LOC111194179
TU193757 lncRNA downstream 89140 21700822 ~ 21701945 (+) True G143127
TU193812 lncRNA downstream 99684 21711366 ~ 21715175 (+) True G143172
TU193829 lncRNA downstream 199609 21811291 ~ 21908314 (+) False G143182
XM_007231072.2 mRNA upstream 1243 21592040 ~ 21598440 (+) True rps20
XM_007231069.3 mRNA upstream 19959 21569082 ~ 21579724 (+) True plag1
XM_007231068.3 mRNA upstream 37633 21530341 ~ 21562050 (+) True LOC103045570
XM_007231067.3 mRNA upstream 72460 21509741 ~ 21527223 (+) True penk
XM_022677723.1 mRNA upstream 250051 21339580 ~ 21349632 (+) True LOC111194246
XM_022677649.1 mRNA downstream 12711 21624393 ~ 21632573 (+) False LOC103047292
XM_007231074.3 mRNA downstream 14637 21626319 ~ 21632573 (+) True LOC103047292
XM_007231078.2 mRNA downstream 106639 21718321 ~ 21724125 (+) True lypla1
XM_022677724.1 mRNA downstream 128559 21740241 ~ 21747485 (+) True LOC111194247
XM_007240031.3 mRNA downstream 207846 21819528 ~ 21839338 (+) True LOC103039256
TU193349 other upstream 809561 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 1379536 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 1731391 19736306 ~ 19868292 (+) True G142620
TU192797 other upstream 2729366 18865450 ~ 18870317 (+) True G142384
TU192790 other upstream 2741176 18856236 ~ 18858507 (+) True G142378
TU193751 other downstream 34223 21645905 ~ 21646705 (+) True G143122
TU193826 other downstream 258994 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 924003 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 980103 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 1453346 23065028 ~ 23065099 (+) True trnat-cgu

Expression Profile