RNA id: TU193751


Basic Information

Item Value
RNA id TU193751
length 801
RNA type TUCP
GC content 0.52
exon number 1
gene id G143122
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21645905 ~ 21646705 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCCTTCTTCCATCTGGTGTGTGCAGCTTCAACACAGGGAAATGCATGGTCTCAGACACAAGGCCCAGCAGTGCCTCGAAAGAGTGTGTGGTCCTCTTCTGTAGCATTAGTGTATGCTTCTCTTCTGGATCTCCGTTGCGGAACACCACCAGCCGCTTGGGTGTGTGCAGCAGAGCTGCGTGCTCGTTCCGTCTGGCCCTGCGAGCGCTGCGTGGGCCAGGGCTCTGACGCCGTATGGCCACCCGCCTGTTGCTGACCGGCCGGGCATTGTACCATGGTGGTGGTTTGCGCCGTGCCCGCTCCAGGTCAATCGGCTTCACTGTGCGCTTGTCAGAGCAGATGTAGGAATGGCCGTGGTGCAGCTGGTCAAGGGAATGGACTGTGGTATGACCACGAGGTGTGGTGATAGTTCGCACTCCAAAGGGCAGCGGAACACGCTTTGACAGACTGTCCAGCAGTCCCTCAAAGGTTTTGAACGTTCGATTATTGATAACCACGGGTAAACCACTGAACTGCGCATCACCGCTTTTGTAGAAGCACACACGCTTTGAGGAAATAGGCTGACTCATGTATGGTTGGCGATATGTCATCAAAGTATGAACGCTGCCAGAAGACTGGGCCTGTGGTGGGGCTTTCCTCACTGCTGGAGCTTCATTCATAATCTCACTGTAGGAGAGGGAGATGTAGAAGGAGGGAtgtgaagaaaagagagaaaacaaggtTACTAAACTGTTTAAACTTGTAAATCTCTGTCCACACAACAGTTTGATTCAATTGCAGGAAATGCTACTCTAATTTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193732 lncRNA upstream 3047 21634242 ~ 21642858 (+) True G143114
TU193730 lncRNA upstream 63239 21581424 ~ 21582666 (+) True G143112
TU193729 lncRNA upstream 66417 21578673 ~ 21579488 (+) False plag1
TU193667 lncRNA upstream 185544 21459895 ~ 21460361 (+) True G143058
TU193660 lncRNA upstream 195858 21449795 ~ 21450047 (+) True G143052
XR_002650971.1 lncRNA downstream 9074 21655779 ~ 21658620 (+) True LOC111194179
TU193757 lncRNA downstream 54117 21700822 ~ 21701945 (+) True G143127
TU193812 lncRNA downstream 64661 21711366 ~ 21715175 (+) True G143172
TU193829 lncRNA downstream 164586 21811291 ~ 21908314 (+) False G143182
TU193837 lncRNA downstream 208422 21855127 ~ 21956720 (+) True G143189
XM_022677649.1 mRNA upstream 13332 21624393 ~ 21632573 (+) False LOC103047292
XM_007231074.3 mRNA upstream 13332 21626319 ~ 21632573 (+) True LOC103047292
XM_022677639.1 mRNA upstream 34223 21599683 ~ 21611682 (+) True LOC103047556
XM_022677638.1 mRNA upstream 34223 21599683 ~ 21611682 (+) False LOC103047556
XM_007231072.2 mRNA upstream 47465 21592040 ~ 21598440 (+) True rps20
XM_007231078.2 mRNA downstream 71616 21718321 ~ 21724125 (+) True lypla1
XM_022677724.1 mRNA downstream 93536 21740241 ~ 21747485 (+) True LOC111194247
XM_007240031.3 mRNA downstream 172823 21819528 ~ 21839338 (+) True LOC103039256
XM_007243414.3 mRNA downstream 203560 21850265 ~ 21856543 (+) True chmp5
XM_015603300.2 mRNA downstream 233405 21880110 ~ 21938486 (+) False LOC103040396
TU193733 other upstream 44540 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 855783 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 1425758 20217279 ~ 20220147 (+) False rnf138
TU193111 other upstream 1777613 19736306 ~ 19868292 (+) True G142620
TU192797 other upstream 2775588 18865450 ~ 18870317 (+) True G142384
TU193826 other downstream 223971 21870676 ~ 21874386 (+) True G143182
TU194024 other downstream 888980 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 945080 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 1418323 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 1418582 23065287 ~ 23065358 (+) True trnaa-cgc_2

Expression Profile