RNA id: TU193957


Basic Information

Item Value
RNA id TU193957
length 3020
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G143283
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22478666 ~ 22566331 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAAAGTTCACAAACTCTTAggttttaagtatttattgaGTCATTTTCATAATAATGAAGGGCACCAGCTAGTTGTTAGACTATTAAATATTGGAGTACATAGAAAGTAGACCGACTAAATACGTACAATGTTTAGTTTGGAATAAAAacgagaaaaaaagaagaaaaaataagtcACACCTCAGTCAAGCACCACAACTTAAAACCTTTTTTGCACTAAGTTGTTGTACATTAGTAGAACGTCATCGTATACACATCTGTCTCCATCGTTTTAACTGTCACTTGAATGAACAAGGCAACGAACGAACGGACTAATGAaggaaaatgaactgaacttatTTTGATAGAAATgactaaggctacgttcacattacaagccgcattgctcaaatcagattttttgctcagatcttgagggttcacattcacaaatgtaagtgatctgtatctgtgtgtaatgtgaacgaatctgtccttaaaacatctcacatttgcacattgatacctgtattaACGTcttcttcttcaccaacaacacaaaacgactcgtagctttaagACAGTGAAAtggatgtgttagcagctcatatgtggagaaTCTGGAgtagagagtaaacagctggtctgaagttcatgctcaggtcgagacAATagtatataTTTCTACAGAACCGGAGACCGCAGTTCTAGGACCCTATGTTTTCGCGACACTGCCACCTAGCGAAATTAATGACTTACTACACCTTAAATAATACCACCACGTTAGCTAACTACTAAcagatttaaaggcttatttcacacaaatattaccaattcagctaactacttacagaTTTCAAGGCTTATTCCATCCAAATATTACTTTGTCTTAGAATTTATCTTAGAACTTCCAACCACATACCAGAGACACAAGGAAAACTTGGGGctataatatttatttgatatCTGAAAATTATTTGAACTACTTTTCaattattaaaatctttttaGACCTTCAAACTATTCTAGTGTCTATTAGAGCTGGgcgaaattgaaaaaaaaatattggaaacagacagcattatttaaaatgaggcaaaaCTATTGTTccctttaaatttaatttgattttttttgtttacgaATAGTAAGCTGCTCCTAAAAACgtacatgcagcttttatattaaagatgGTACAAACATAACCTACTTGTATTTTCAGTATTAAAGTGAGGGCTGCCTcgacagagctatacacagtctacggtcccacccatacagtcattggtcccacccaggctaggtgtaacccagcccttttacaataaacacatattttttaatagagctgaataacgttttaaaaaacgaattctgtggggatataaaaatttgacaatataagcagaggttacactagctgttgcatttaaataaaggaggtagaattacagtattttggaaaaaaaacatgattgaaagttgtctgttttgccattgaaacctatggggatgagtggggttacacagctttctgcagcagggggcgcccgacctgtggtggcttcacttttgagaggcgatgctctgtccagctatacacagtctatgcttTACATCTGTAttcgatttaggaccacatatggcTCAGGTCAGATTTGAGTCAcctcagcctggtaatgtgaacgtagcctaactaactaactaacctaaagTCTTGATCATTGAGGTCTgtatcaggttttttttttgtaattgtgtaGTTTTTGGAGGCTCACTGATCTCAGTGTTCTCAATGTTCTCAGTGTTCTCAGCTTTCTACCAGATCTCATTGTTTTTGAGTAATGAGATTTGATTCTGGTACATCCATGGGAACACCATCTTCATCTTCCTCTACATCTACGTCATTTACAGCAACATTTTCAGCTCATTAAGATTTTTTGaggagtttaaatgtttaagccCTTTGTTTTGCGGAACCTCGAGACGTCAGGAGGCTCCGTGTCATTTTTCTAAGGCCTATGCATGCTGCATGGACAGAGCTTTTTTATACTTTCATACAAGGACGTTTGAAACCCTTCTGACCCACAGGGAGGAGATCAGAAGAGCACTGACCCAGACGGACTgggtcaatcagatctgtgtgtGTCATCTTCTTGTATtcttttgatttgttttgaagGTCTTCTCTgtcttgttgttgtttttgtctttatGAAAGACTTTAGTGATTTTAGTATTGGGAATTAAAATTGAAGAATTTAAGAAGCACACAAAGGGGATTTCTACCAGGACGAAACAGGATGATTTCAGTCTGGTTCATCATCAAGACTACAGCGCCTCCTACTGAATCCTCCTGAAAGAACTGAGATCTGCATCTACAGCAGTACAGACCacttttttgactttttgaatCTGTGGTATTAGCAGCTAGCTTGTTGCTGTTTCAGAATCAAAACTTCTGAACTTCAGAACACCAgaaacctcttttttttctttcttttgtcctGATTAATTGATGCTCATGGACATTGTGTAGATCTACCCAGTGTCAAGCTGCGTCAAGTTTTTAACTCTACGTTTTTAGTGATGGATCCACCTGAAGCTATGTATTCCTGTGGCCTAGCATAGAAGCTGACCTCTAGTTTAAAACCTGCATTGAAAATGGGCATCTTCTTCTAGCCTCAATGTATATAGCATAAAAAGGAGTTGCCATGAACTGCTGATCAGTGATCTTTTATTAGAACTGAAGATGTGAAGACTGATCAATAGAGGGAGGCAGTCTGTACGCAGTGGATGCACATGAAGAAGTATAACGAGAGCAGTTTGTCTTGTCTTGGTTGATTTGCCTTTCTCACCAGTTCTGTTGTTCACTTGCTGTATCACCCTGTTCCACTGTCAGCAGAGACAAACCAGTATAACAACCACAGCTGTGACTTTGTGGTGTAGCGTGGATGTAAATAAACAAGCGTTTGCCAAAGTTTGTAAAAGGGACCTGACTCTTGAGGCTGCTGTGAGttttatttgagtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193956 lncRNA upstream 93063 22385337 ~ 22385673 (+) True G143282
TU193837 lncRNA upstream 522016 21855127 ~ 21956720 (+) True G143189
TU193829 lncRNA upstream 570422 21811291 ~ 21908314 (+) False G143182
TU193812 lncRNA upstream 763561 21711366 ~ 21715175 (+) True G143172
TU193757 lncRNA upstream 776791 21700822 ~ 21701945 (+) True G143127
TU194044 lncRNA downstream 86533 22570024 ~ 22576268 (+) True G143334
TU194046 lncRNA downstream 88222 22571713 ~ 22572857 (+) True G143336
TU194032 lncRNA downstream 99183 22582674 ~ 22586315 (+) True G143325
TU194027 lncRNA downstream 109016 22592507 ~ 22610447 (+) False G143324
TU194048 lncRNA downstream 110477 22593968 ~ 22599236 (+) True G143338
XM_015606813.2 mRNA upstream 754 22398129 ~ 22477982 (+) True smarcd3
XM_007230321.3 mRNA downstream 29795 22513286 ~ 22530293 (+) False LOC103022164
XM_007230320.3 mRNA downstream 30067 22513558 ~ 22530293 (+) True LOC103022164
XM_022677657.1 mRNA downstream 129154 22612645 ~ 22684530 (+) True prkdc
XM_007230323.3 mRNA downstream 220154 22703645 ~ 22718565 (+) True ncf2
XM_007230328.3 mRNA downstream 371093 22854584 ~ 22870140 (+) True hacd1
TU193826 other upstream 604350 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 832031 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 877371 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 1688614 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 2258589 20217279 ~ 20220147 (+) False rnf138
TU194024 other downstream 52194 22535685 ~ 22610447 (+) False G143324
TU194021 other downstream 108294 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 581537 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 581796 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 901291 23384782 ~ 23394167 (+) True LOC111194185

Expression Profile