RNA id: TU194032


Basic Information

Item Value
RNA id TU194032
length 914
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G143325
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22582674 ~ 22586315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggccgggctggagagctggaagccggccgggttggagagctggaagccggccgggttggagagctggaagccggccgggttggagagctggaagccggccgggctggagagctggaagccggccgggctggagagctggaagccggccgggctggagagctggaagccggccgggctggacaGCGTGGTggagctagcaggctagctagcttagctgaagcttcagagagcggcgctgccgagCGCGGGTAGAGTACagcccctgggggaaacggcaatggagtacgggctggtgcggggtagagctcctcttcctcctcggagctgctgggagcgcaacCGAGGAAGTCCCACGGCTTCCGCTCCACGAGCCTCGGGTACTCGTAGGTTTCACCCAACCTGAGACGAGTCCCGAGGCTCCCCGCACACACCCGCAGCGCCCCCCCAagcaaatcctccccggaaaagggatCCTCcttcggctggcgggaccccttagaacgtctaccccgaggcctgtggcgtcctttaggtctcggggattccaacgccggggtcccgcatggAGCGTGGCGAATCGCCAACCTGGAGCCGGTCCATGGGTTTGCTGCGTCCATTGTTCTGGTCGATCCTTCTGTCAGGGtggggtgcagggaggacgaggaggcggacgcaaatgcaaacaacaggggatttattaacaaaaatacaaaataaacagggaatataatGAAAACAAggctgaggaaactggggaaaacatggaCCACTGACAGACgttaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagtggaaaaacacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194044 lncRNA upstream 6406 22570024 ~ 22576268 (+) True G143334
TU194046 lncRNA upstream 9817 22571713 ~ 22572857 (+) True G143336
TU193969 lncRNA upstream 16343 22478736 ~ 22566331 (+) True G143283
TU193958 lncRNA upstream 99183 22478666 ~ 22483491 (+) False G143283
TU193957 lncRNA upstream 99183 22478736 ~ 22483491 (+) False G143283
TU194027 lncRNA downstream 6192 22592507 ~ 22610447 (+) False G143324
TU194048 lncRNA downstream 7653 22593968 ~ 22599236 (+) True G143338
TU194055 lncRNA downstream 103218 22689533 ~ 22689904 (+) True G143343
TU194080 lncRNA downstream 150728 22737043 ~ 22738935 (+) True G143363
TU194091 lncRNA downstream 157319 22743634 ~ 22745646 (+) True G143374
XM_007230321.3 mRNA upstream 52381 22513286 ~ 22530293 (+) False LOC103022164
XM_007230320.3 mRNA upstream 52381 22513558 ~ 22530293 (+) True LOC103022164
XM_015606815.2 mRNA upstream 104692 22433425 ~ 22477982 (+) False smarcd3
XM_022677657.1 mRNA downstream 26330 22612645 ~ 22684530 (+) True prkdc
XM_007230323.3 mRNA downstream 117330 22703645 ~ 22718565 (+) True ncf2
XM_007230328.3 mRNA downstream 268269 22854584 ~ 22870140 (+) True hacd1
XM_022677651.1 mRNA downstream 307320 22893635 ~ 22896991 (+) True LOC111194171
XM_007230330.3 mRNA downstream 334695 22921010 ~ 22932711 (+) True clul1
TU193826 other upstream 708288 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 935969 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 981309 21598682 ~ 21601365 (+) False LOC103047556
TU193349 other upstream 1792552 20782583 ~ 20790122 (+) True G142820
TU193252 other upstream 2362527 20217279 ~ 20220147 (+) False rnf138
TU194021 other downstream 5470 22591785 ~ 22610447 (+) True G143324
trnat-cgu other downstream 478713 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 478972 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 798467 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 798853 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile