RNA id: TU194080


Basic Information

Item Value
RNA id TU194080
length 242
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G143363
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 22737043 ~ 22738935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCACAAAGAAATATCCACCTAACAGGTGTTATATCACCTATGCTACGGTCTTAAAACCGTGTGCTCCATTTTCCacctatgttTTCATTGCAGCTCTGTTTCTCCTTCTAGTGAGCAAAAACACATCCTAGAACATTCTTGCTGTCTCTCACACAAGAGACAGGACATCAAAAGAAACATTCTAAACAATGTGTTATGTGTGTCTCTTGAAAATGGCAAAGAAATCAATAAagaaataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194055 lncRNA upstream 47139 22689533 ~ 22689904 (+) True G143343
TU194027 lncRNA upstream 126596 22592507 ~ 22610447 (+) False G143324
TU194048 lncRNA upstream 137807 22593968 ~ 22599236 (+) True G143338
TU194032 lncRNA upstream 150728 22582674 ~ 22586315 (+) True G143325
TU194044 lncRNA upstream 160775 22570024 ~ 22576268 (+) True G143334
TU194091 lncRNA downstream 4699 22743634 ~ 22745646 (+) True G143374
TU194092 lncRNA downstream 6777 22745712 ~ 22746808 (+) True G143375
TU194100 lncRNA downstream 15117 22754052 ~ 22798828 (+) True G143382
TU194387 lncRNA downstream 200999 22939934 ~ 22942369 (+) True G143621
TU194390 lncRNA downstream 212378 22951313 ~ 22954599 (+) True G143623
XM_007230323.3 mRNA upstream 18478 22703645 ~ 22718565 (+) True ncf2
XM_022677657.1 mRNA upstream 52513 22612645 ~ 22684530 (+) True prkdc
XM_007230321.3 mRNA upstream 206750 22513286 ~ 22530293 (+) False LOC103022164
XM_007230320.3 mRNA upstream 206750 22513558 ~ 22530293 (+) True LOC103022164
XM_007230318.3 mRNA upstream 259061 22433426 ~ 22477982 (+) False smarcd3
XM_007230328.3 mRNA downstream 115649 22854584 ~ 22870140 (+) True hacd1
XM_022677651.1 mRNA downstream 154700 22893635 ~ 22896991 (+) True LOC111194171
XM_007230330.3 mRNA downstream 182075 22921010 ~ 22932711 (+) True clul1
XM_007230333.3 mRNA downstream 195730 22934665 ~ 22939259 (+) True tyms
XM_022677624.1 mRNA downstream 252527 22991462 ~ 23003994 (+) True LOC103031382
TU194024 other upstream 126596 22535685 ~ 22610447 (+) False G143324
TU194021 other upstream 126596 22591785 ~ 22610447 (+) True G143324
TU193826 other upstream 862657 21870676 ~ 21874386 (+) True G143182
TU193751 other upstream 1090338 21645905 ~ 21646705 (+) True G143122
TU193733 other upstream 1135678 21598682 ~ 21601365 (+) False LOC103047556
trnat-cgu other downstream 326093 23065028 ~ 23065099 (+) True trnat-cgu
trnaa-cgc_2 other downstream 326352 23065287 ~ 23065358 (+) True trnaa-cgc_2
XR_002650977.1 other downstream 645847 23384782 ~ 23394167 (+) True LOC111194185
TU194568 other downstream 646233 23385168 ~ 23395240 (+) False LOC111194251
TU194571 other downstream 646233 23385168 ~ 23395240 (+) False LOC111194251

Expression Profile